Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005742 18 1135 NP_671714 18 1135 XP_006715890 18 1135 XP_005250160 18 1135 XP_005250159 18 1135 NP_073153 17 4312 XP_006726447 17 4312 XP_005276263 17 4312 XP_006712754 17 4312 XP_006712753 17 4312 XP_005264736 17 4312 NP_055692 16 5631 NP_208384 16 5631 NP_001032412 16 5631 NP_001008392 16 5631 XP_005257947 16 5631 XP_005257946 16 5631 XP_005257945 16 5631 XP_006722277 16 5631 NP_005795 16 7355 NP_775753 15 9605 NP_055515 15 9605 NP_006442 15 9605 NP_899152 15 9605 NP_877590 15 9605 XP_006725309 15 9605 XP_006725308 15 9605 XP_006725305 15 9605 XP_005255772 15 9605 XP_005255771 15 9605 XP_005255770 15 9605 XP_005248287 15 9605 NP_001106212 15 9605 NP_001135744 15 9605 NP_612144 15 9605>NP_005742 Length = 3907 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QLNGQVTKL 9 QLN QVTKL Sbjct: 2296 QLNEQVTKL 2304>NP_671714 Length = 3899 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QLNGQVTKL 9 QLN QVTKL Sbjct: 2288 QLNEQVTKL 2296>XP_006715890 Length = 3860 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QLNGQVTKL 9 QLN QVTKL Sbjct: 2249 QLNEQVTKL 2257>XP_005250160 Length = 3939 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QLNGQVTKL 9 QLN QVTKL Sbjct: 2328 QLNEQVTKL 2336>XP_005250159 Length = 3952 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QLNGQVTKL 9 QLN QVTKL Sbjct: 2341 QLNEQVTKL 2349>NP_073153 Length = 1944 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LNGQVTKL 9 LNG +TKL Sbjct: 1181 LNGHLTKL 1188>XP_006726447 Length = 368 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LNGQVTKL 9 LNG +TKL Sbjct: 166 LNGHLTKL 173>XP_005276263 Length = 368 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LNGQVTKL 9 LNG +TKL Sbjct: 166 LNGHLTKL 173>XP_006712754 Length = 1784 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LNGQVTKL 9 LNG +TKL Sbjct: 1021 LNGHLTKL 1028>XP_006712753 Length = 1846 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LNGQVTKL 9 LNG +TKL Sbjct: 1083 LNGHLTKL 1090>XP_005264736 Length = 671 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LNGQVTKL 9 LNG +TKL Sbjct: 469 LNGHLTKL 476>NP_055692 Length = 1942 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 LNGQVTK 8 LNG VTK Sbjct: 124 LNGMVTK 130>NP_208384 Length = 2080 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LNGQVTKL 9 +NG VTK+ Sbjct: 650 INGSVTKI 657>NP_001032412 Length = 2649 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LNGQVTKL 9 +NG VTK+ Sbjct: 1219 INGSVTKI 1226>NP_001008392 Length = 1079 Score = 16.2 bits (30), Expect = 5631 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 QLNGQVTKL 9 +LNG++ K+ Sbjct: 353 ELNGEINKI 361>XP_005257947 Length = 1935 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 LNGQVTK 8 LNG VTK Sbjct: 124 LNGMVTK 130>XP_005257946 Length = 1943 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 LNGQVTK 8 LNG VTK Sbjct: 124 LNGMVTK 130>XP_005257945 Length = 1969 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 LNGQVTK 8 LNG VTK Sbjct: 124 LNGMVTK 130>XP_006722277 Length = 1970 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 LNGQVTK 8 LNG VTK Sbjct: 124 LNGMVTK 130>NP_005795 Length = 427 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LNGQVTKL 9 +NGQVT L Sbjct: 109 VNGQVTVL 116>NP_775753 Length = 499 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QLNGQVTKL 9 Q+NG+V +L Sbjct: 146 QINGRVRQL 154>NP_055515 Length = 756 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QLNGQVTKL 9 +LNGQ+ L Sbjct: 683 ELNGQIITL 691>NP_006442 Length = 479 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 NGQVTK 8 NGQVT+ Sbjct: 287 NGQVTR 292>NP_899152 Length = 367 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 NGQVTK 8 NGQVT+ Sbjct: 175 NGQVTR 180>NP_877590 Length = 400 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 NGQVTK 8 NGQVT+ Sbjct: 208 NGQVTR 213>XP_006725309 Length = 491 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QLNGQVTKL 9 +LNGQ+ L Sbjct: 418 ELNGQIITL 426>XP_006725308 Length = 505 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QLNGQVTKL 9 +LNGQ+ L Sbjct: 432 ELNGQIITL 440>XP_006725305 Length = 801 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QLNGQVTKL 9 +LNGQ+ L Sbjct: 728 ELNGQIITL 736>XP_005255772 Length = 491 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QLNGQVTKL 9 +LNGQ+ L Sbjct: 418 ELNGQIITL 426>XP_005255771 Length = 505 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QLNGQVTKL 9 +LNGQ+ L Sbjct: 432 ELNGQIITL 440>XP_005255770 Length = 801 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QLNGQVTKL 9 +LNGQ+ L Sbjct: 728 ELNGQIITL 736>XP_005248287 Length = 367 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 NGQVTK 8 NGQVT+ Sbjct: 175 NGQVTR 180>NP_001106212 Length = 585 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 QLNGQVTK 8 +LNG+V K Sbjct: 504 KLNGEVAK 511>NP_001135744 Length = 460 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QLNGQVTKL 9 +LNGQ+ L Sbjct: 387 ELNGQIITL 395>NP_612144 Length = 740 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 QLNGQVTKL 9 +LN Q TKL Sbjct: 324 ELNHQFTKL 332Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.310 0.129 0.330 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 495,110 Number of extensions: 584 Number of successful extensions: 35 Number of sequences better than 10000.0: 35 Number of HSP's gapped: 35 Number of HSP's successfully gapped: 35 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |