Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_065681 17 2528 NP_066124 17 2528 XP_006717999 17 2528 NP_001010893 17 4312 NP_056369 16 5631 XP_005254355 16 5631 NP_002411 16 7355 NP_001238953 16 7355 NP_001238949 16 7355 NP_061819 16 7355 NP_079247 16 7355 NP_001007472 16 7355 NP_066003 16 7355 NP_996830 16 7355 NP_996829 16 7355 NP_996828 16 7355 NP_996827 16 7355 XP_005252275 16 7355 NP_060764 15 9605 NP_001161814 15 9605 NP_001161811 15 9605 NP_001239542 15 9605 NP_689787 15 9605 NP_001161813 15 9605 NP_001161812 15 9605 NP_001239541 15 9605 NP_001014972 15 9605 NP_055312 15 9605 XP_006712053 15 9605 XP_005264320 15 9605 XP_006712052 15 9605 XP_005264319 15 9605 XP_005264318 15 9605 NP_001092691 15 9605>NP_065681 Length = 1072 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QLLVTVEES 9 QLLVTVE S Sbjct: 499 QLLVTVEGS 507>NP_066124 Length = 1114 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QLLVTVEES 9 QLLVTVE S Sbjct: 499 QLLVTVEGS 507>XP_006717999 Length = 1207 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QLLVTVEES 9 QLLVTVE S Sbjct: 592 QLLVTVEGS 600>NP_001010893 Length = 438 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LLVTVEES 9 LLVT+EE+ Sbjct: 12 LLVTIEEA 19>NP_056369 Length = 617 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QLLVTVEES 9 QLL T++ES Sbjct: 587 QLLSTIDES 595>XP_005254355 Length = 617 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QLLVTVEES 9 QLL T++ES Sbjct: 587 QLLSTIDES 595>NP_002411 Length = 1603 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 QLLVTVEES 9 QLLVT++++ Sbjct: 309 QLLVTIQKT 317>NP_001238953 Length = 1625 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 QLLVTVEES 9 QLLVT++++ Sbjct: 331 QLLVTIQKT 339>NP_001238949 Length = 1642 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 QLLVTVEES 9 QLLVT++++ Sbjct: 348 QLLVTIQKT 356>NP_061819 Length = 359 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 QLLVTVEE 8 ++LVTVEE Sbjct: 334 KVLVTVEE 341>NP_079247 Length = 1566 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 QLLVTVEES 9 QLLVT++++ Sbjct: 239 QLLVTIQKT 247>NP_001007472 Length = 1707 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 QLLVTVEES 9 QLLVT++++ Sbjct: 392 QLLVTIQKT 400>NP_066003 Length = 1554 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 QLLVTVEES 9 QLLVT++++ Sbjct: 239 QLLVTIQKT 247>NP_996830 Length = 1569 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 QLLVTVEES 9 QLLVT++++ Sbjct: 264 QLLVTIQKT 272>NP_996829 Length = 1579 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 QLLVTVEES 9 QLLVT++++ Sbjct: 264 QLLVTIQKT 272>NP_996828 Length = 1556 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 QLLVTVEES 9 QLLVT++++ Sbjct: 239 QLLVTIQKT 247>NP_996827 Length = 1544 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 QLLVTVEES 9 QLLVT++++ Sbjct: 239 QLLVTIQKT 247>XP_005252275 Length = 1734 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 QLLVTVEES 9 QLLVT++++ Sbjct: 419 QLLVTIQKT 427>NP_060764 Length = 538 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 QLLVTVEES 9 Q+L VEES Sbjct: 278 QILAPVEES 286>NP_001161814 Length = 517 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LLVTVEES 9 LLVTVE++ Sbjct: 395 LLVTVEKA 402>NP_001161811 Length = 680 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LLVTVEES 9 LLVTVE++ Sbjct: 558 LLVTVEKA 565>NP_001239542 Length = 1957 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QLLVTVEE 8 Q LVTV+E Sbjct: 1616 QALVTVDE 1623>NP_689787 Length = 682 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LLVTVEES 9 LLVTVE++ Sbjct: 560 LLVTVEKA 567>NP_001161813 Length = 613 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LLVTVEES 9 LLVTVE++ Sbjct: 491 LLVTVEKA 498>NP_001161812 Length = 669 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LLVTVEES 9 LLVTVE++ Sbjct: 547 LLVTVEKA 554>NP_001239541 Length = 1978 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QLLVTVEE 8 Q LVTV+E Sbjct: 1616 QALVTVDE 1623>NP_001014972 Length = 1978 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QLLVTVEE 8 Q LVTV+E Sbjct: 1616 QALVTVDE 1623>NP_055312 Length = 1978 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QLLVTVEE 8 Q LVTV+E Sbjct: 1616 QALVTVDE 1623>XP_006712053 Length = 1467 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QLLVTVEE 8 Q LVTV+E Sbjct: 1105 QALVTVDE 1112>XP_005264320 Length = 1467 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QLLVTVEE 8 Q LVTV+E Sbjct: 1105 QALVTVDE 1112>XP_006712052 Length = 1467 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QLLVTVEE 8 Q LVTV+E Sbjct: 1105 QALVTVDE 1112>XP_005264319 Length = 2049 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QLLVTVEE 8 Q LVTV+E Sbjct: 1722 QALVTVDE 1729>XP_005264318 Length = 2084 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QLLVTVEE 8 Q LVTV+E Sbjct: 1722 QALVTVDE 1729>NP_001092691 Length = 161 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QLLVTVEE 8 Q+LV VEE Sbjct: 111 QMLVRVEE 118Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.302 0.121 0.265 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 463,013 Number of extensions: 920 Number of successful extensions: 34 Number of sequences better than 10000.0: 34 Number of HSP's gapped: 34 Number of HSP's successfully gapped: 34 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.3 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |