Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000258 20 509 NP_001035957 20 509 XP_006721990 20 509 XP_006721989 20 509 XP_005258041 20 509 XP_006721988 20 509 XP_006721987 20 509 XP_006721986 20 509 XP_005258040 20 509 XP_006721985 20 509 NP_001269607 16 5631 NP_001269606 16 5631 NP_000457 16 5631 NP_006761 16 5631 NP_057314 16 5631 NP_002220 16 5631 XP_005250490 16 5631 XP_005250486 16 5631 NP_001849 16 7355 NP_780775 16 7355 NP_001230199 16 7355 NP_055176 16 7355 NP_001231627 16 7355 NP_004917 16 7355 NP_060718 16 7355 NP_001231630 16 7355 NP_066933 15 9605 NP_000570 15 9605 NP_001093638 15 9605 NP_631918 15 9605 NP_005984 15 9605 NP_005651 15 9605 XP_006726460 15 9605 XP_006722353 15 9605 XP_005256453 15 9605 XP_005251116 15 9605 XP_006716714 15 9605 XP_005275982 15 9605>NP_000258 Length = 2818 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QLLTGLKGS 9 +LLTGLKGS Sbjct: 1674 RLLTGLKGS 1682>NP_001035957 Length = 2839 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QLLTGLKGS 9 +LLTGLKGS Sbjct: 1695 RLLTGLKGS 1703>XP_006721990 Length = 2823 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QLLTGLKGS 9 +LLTGLKGS Sbjct: 1705 RLLTGLKGS 1713>XP_006721989 Length = 2823 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QLLTGLKGS 9 +LLTGLKGS Sbjct: 1705 RLLTGLKGS 1713>XP_005258041 Length = 2836 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QLLTGLKGS 9 +LLTGLKGS Sbjct: 1674 RLLTGLKGS 1682>XP_006721988 Length = 2846 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QLLTGLKGS 9 +LLTGLKGS Sbjct: 1684 RLLTGLKGS 1692>XP_006721987 Length = 2849 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QLLTGLKGS 9 +LLTGLKGS Sbjct: 1705 RLLTGLKGS 1713>XP_006721986 Length = 2854 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QLLTGLKGS 9 +LLTGLKGS Sbjct: 1692 RLLTGLKGS 1700>XP_005258040 Length = 2857 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QLLTGLKGS 9 +LLTGLKGS Sbjct: 1695 RLLTGLKGS 1703>XP_006721985 Length = 2867 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QLLTGLKGS 9 +LLTGLKGS Sbjct: 1705 RLLTGLKGS 1713>NP_001269607 Length = 1075 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LLTGLKGS 9 LLTG KGS Sbjct: 388 LLTGGKGS 395>NP_001269606 Length = 1226 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LLTGLKGS 9 LLTG KGS Sbjct: 596 LLTGGKGS 603>NP_000457 Length = 1283 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LLTGLKGS 9 LLTG KGS Sbjct: 596 LLTGGKGS 603>NP_006761 Length = 520 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 TGLKGS 9 TGLKGS Sbjct: 345 TGLKGS 350>NP_057314 Length = 521 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 LTGLKG 8 LTGLKG Sbjct: 47 LTGLKG 52>NP_002220 Length = 347 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QLLTGLKG 8 QLL G+KG Sbjct: 337 QLLLGVKG 344>XP_005250490 Length = 700 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LLTGLKGS 9 LLTG KGS Sbjct: 13 LLTGGKGS 20>XP_005250486 Length = 1243 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LLTGLKGS 9 LLTG KGS Sbjct: 556 LLTGGKGS 563>NP_001849 Length = 1142 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 LTGLKGS 9 LTG+KG+ Sbjct: 972 LTGMKGA 978>NP_780775 Length = 1026 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LLTGLKGS 9 +LTGL+G+ Sbjct: 862 ILTGLEGN 869>NP_001230199 Length = 1100 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LLTGLKGS 9 +LTGL+G+ Sbjct: 936 ILTGLEGN 943>NP_055176 Length = 1100 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LLTGLKGS 9 +LTGL+G+ Sbjct: 936 ILTGLEGN 943>NP_001231627 Length = 338 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QLLTGLKG 8 QLL+ LKG Sbjct: 66 QLLSSLKG 73>NP_004917 Length = 338 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QLLTGLKG 8 QLL+ LKG Sbjct: 66 QLLSSLKG 73>NP_060718 Length = 605 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QLLTGLKGS 9 Q +TG++GS Sbjct: 22 QAVTGVRGS 30>NP_001231630 Length = 407 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QLLTGLKG 8 QLL+ LKG Sbjct: 135 QLLSSLKG 142>NP_066933 Length = 1796 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 LTGLKG 8 LTG+KG Sbjct: 1694 LTGIKG 1699>NP_000570 Length = 352 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 QLLTGL 6 QLLTGL Sbjct: 102 QLLTGL 107>NP_001093638 Length = 352 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 QLLTGL 6 QLLTGL Sbjct: 102 QLLTGL 107>NP_631918 Length = 672 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 QLLTGLK 7 QLL GLK Sbjct: 180 QLLNGLK 186>NP_005984 Length = 1192 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 QLLTGLK 7 QLL GLK Sbjct: 364 QLLVGLK 370>NP_005651 Length = 396 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QLLTGLKGS 9 +LLT +KGS Sbjct: 388 KLLTKVKGS 396>XP_006726460 Length = 247 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 QLLTGL 6 QLLTGL Sbjct: 215 QLLTGL 220>XP_006722353 Length = 1165 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 QLLTGLK 7 QLL GLK Sbjct: 364 QLLVGLK 370>XP_005256453 Length = 1175 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 QLLTGLK 7 QLL GLK Sbjct: 347 QLLVGLK 353>XP_005251116 Length = 1780 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 LTGLKG 8 LTG+KG Sbjct: 1694 LTGIKG 1699>XP_006716714 Length = 1796 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 LTGLKG 8 LTG+KG Sbjct: 1694 LTGIKG 1699>XP_005275982 Length = 187 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 QLLTGL 6 QLLTGL Sbjct: 155 QLLTGL 160Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.310 0.136 0.355 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 528,712 Number of extensions: 1186 Number of successful extensions: 38 Number of sequences better than 10000.0: 38 Number of HSP's gapped: 38 Number of HSP's successfully gapped: 38 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.4 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |