Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001275701 20 509 NP_004561 20 509 NP_001275703 20 509 XP_005253450 20 509 XP_006719151 20 509 NP_060264 18 1935 XP_005251551 18 1935 XP_006716857 18 1935 NP_060959 17 3301 XP_006711515 17 3301 XP_006711514 17 3301 XP_006711513 17 3301 NP_477352 17 4312 XP_005261692 17 4312 XP_005261691 17 4312 NP_001186704 16 5631 NP_001295 16 5631 NP_060392 16 5631 NP_001274324 16 5631 XP_006712547 16 5631 NP_775901 16 7355 XP_005266736 16 7355 XP_006722498 16 7355 XP_006722497 16 7355 NP_001175 15 9605 NP_001274152 15 9605 NP_004216 15 9605 NP_057422 15 9605 NP_054858 15 9605 NP_002051 15 9605 XP_005270807 15 9605 NP_001128251 15 9605 NP_001001915 15 9605>NP_001275701 Length = 1486 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QLLLNLMEM 9 QLLLNL+EM Sbjct: 1152 QLLLNLLEM 1160>NP_004561 Length = 1445 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QLLLNLMEM 9 QLLLNL+EM Sbjct: 1111 QLLLNLLEM 1119>NP_001275703 Length = 1264 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QLLLNLMEM 9 QLLLNL+EM Sbjct: 930 QLLLNLLEM 938>XP_005253450 Length = 1486 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QLLLNLMEM 9 QLLLNL+EM Sbjct: 1152 QLLLNLLEM 1160>XP_006719151 Length = 1486 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QLLLNLMEM 9 QLLLNL+EM Sbjct: 1152 QLLLNLLEM 1160>NP_060264 Length = 1801 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 QLLLNLMEM 9 QL LNL+EM Sbjct: 379 QLALNLLEM 387>XP_005251551 Length = 1801 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 QLLLNLMEM 9 QL LNL+EM Sbjct: 379 QLALNLLEM 387>XP_006716857 Length = 1834 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 QLLLNLMEM 9 QL LNL+EM Sbjct: 412 QLALNLLEM 420>NP_060959 Length = 2964 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 QLLLNLME 8 Q+LLNL+E Sbjct: 2921 QILLNLLE 2928>XP_006711515 Length = 2904 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 QLLLNLME 8 Q+LLNL+E Sbjct: 2861 QILLNLLE 2868>XP_006711514 Length = 2964 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 QLLLNLME 8 Q+LLNL+E Sbjct: 2921 QILLNLLE 2928>XP_006711513 Length = 2964 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 QLLLNLME 8 Q+LLNL+E Sbjct: 2921 QILLNLLE 2928>NP_477352 Length = 2102 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 QLLLNLMEM 9 +LL+NL+E+ Sbjct: 728 ELLMNLLEL 736>XP_005261692 Length = 1854 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 QLLLNLMEM 9 +LL+NL+E+ Sbjct: 756 ELLMNLLEL 764>XP_005261691 Length = 2099 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 QLLLNLMEM 9 +LL+NL+E+ Sbjct: 756 ELLMNLLEL 764>NP_001186704 Length = 1133 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 QLLLNLME 8 +LLLNL+E Sbjct: 325 ELLLNLIE 332>NP_001295 Length = 1380 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 QLLLNLME 8 +LLLNL+E Sbjct: 572 ELLLNLIE 579>NP_060392 Length = 669 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QLLLNLMEM 9 +L LNL+EM Sbjct: 528 KLYLNLLEM 536>NP_001274324 Length = 1688 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 QLLLNLME 8 QLLLNL++ Sbjct: 796 QLLLNLVD 803>XP_006712547 Length = 1674 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 QLLLNLME 8 QLLLNL++ Sbjct: 793 QLLLNLVD 800>NP_775901 Length = 2226 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LLLNLMEM 9 LLLN ME+ Sbjct: 1218 LLLNFMEV 1225>XP_005266736 Length = 1314 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LLLNLMEM 9 LLLN ME+ Sbjct: 306 LLLNFMEV 313>XP_006722498 Length = 2059 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LLLNLMEM 9 LLLN ME+ Sbjct: 1219 LLLNFMEV 1226>XP_006722497 Length = 2227 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LLLNLMEM 9 LLLN ME+ Sbjct: 1219 LLLNFMEV 1226>NP_001175 Length = 2644 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 LLNLME 8 LLNLME Sbjct: 809 LLNLME 814>NP_001274152 Length = 1791 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 LLNLMEM 9 L+NLME+ Sbjct: 1137 LINLMEL 1143>NP_004216 Length = 1052 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QLLLNLME 8 QLLL L+E Sbjct: 818 QLLLELLE 825>NP_057422 Length = 975 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QLLLNLMEM 9 QLL N++EM Sbjct: 823 QLLGNMIEM 831>NP_054858 Length = 1791 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 LLNLMEM 9 L+NLME+ Sbjct: 1137 LINLMEL 1143>NP_002051 Length = 333 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LLLNLMEM 9 L+LNL+E+ Sbjct: 221 LVLNLLEL 228>XP_005270807 Length = 333 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LLLNLMEM 9 L+LNL+E+ Sbjct: 221 LVLNLLEL 228>NP_001128251 Length = 1015 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QLLLNLMEM 9 QLL N++EM Sbjct: 863 QLLGNMIEM 871>NP_001001915 Length = 317 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QLLLNLME 8 QLL+NL E Sbjct: 83 QLLVNLWE 90Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.333 0.144 0.349 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 376,473 Number of extensions: 684 Number of successful extensions: 33 Number of sequences better than 10000.0: 33 Number of HSP's gapped: 33 Number of HSP's successfully gapped: 33 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.3 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |