Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001245210 19 869 NP_000242 19 869 XP_005264389 19 869 XP_003960787 17 2528 XP_003118801 17 2528 XP_003119723 17 2528 NP_055452 17 3301 NP_001139311 17 3301 NP_689571 17 3301 XP_006723071 17 3301 XP_006723070 17 3301 XP_005251384 17 3301 XP_006716547 17 3301 NP_001139310 17 3301 NP_997229 16 7355 NP_003986 16 7355 XP_005251536 16 7355 XP_006716841 16 7355 XP_005251535 16 7355 NP_001004688 15 9605 NP_001004691 15 9605 NP_001004690 15 9605>NP_001245210 Length = 868 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QLDAVASFA 9 QLDAV SFA Sbjct: 535 QLDAVVSFA 543>NP_000242 Length = 934 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QLDAVASFA 9 QLDAV SFA Sbjct: 601 QLDAVVSFA 609>XP_005264389 Length = 921 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QLDAVASFA 9 QLDAV SFA Sbjct: 601 QLDAVVSFA 609>XP_003960787 Length = 675 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 LDAVASFA 9 LDAVA+FA Sbjct: 511 LDAVAAFA 518>XP_003118801 Length = 675 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 LDAVASFA 9 LDAVA+FA Sbjct: 511 LDAVAAFA 518>XP_003119723 Length = 675 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 LDAVASFA 9 LDAVA+FA Sbjct: 511 LDAVAAFA 518>NP_055452 Length = 333 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 DAVASFA 9 DAVASFA Sbjct: 71 DAVASFA 77>NP_001139311 Length = 348 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 DAVASFA 9 DAVASFA Sbjct: 71 DAVASFA 77>NP_689571 Length = 221 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 QLDAVASF 8 QLD VASF Sbjct: 81 QLDLVASF 88>XP_006723071 Length = 214 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 QLDAVASF 8 QLD VASF Sbjct: 81 QLDLVASF 88>XP_006723070 Length = 246 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 QLDAVASF 8 QLD VASF Sbjct: 81 QLDLVASF 88>XP_005251384 Length = 320 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 DAVASFA 9 DAVASFA Sbjct: 58 DAVASFA 64>XP_006716547 Length = 348 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 DAVASFA 9 DAVASFA Sbjct: 71 DAVASFA 77>NP_001139310 Length = 300 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 DAVASFA 9 DAVASFA Sbjct: 38 DAVASFA 44>NP_997229 Length = 526 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QLDAVASF 8 Q DAVA+F Sbjct: 454 QADAVATF 461>NP_003986 Length = 1047 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LDAVASF 8 LDAV+SF Sbjct: 938 LDAVSSF 944>XP_005251536 Length = 721 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LDAVASF 8 LDAV+SF Sbjct: 612 LDAVSSF 618>XP_006716841 Length = 1026 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LDAVASF 8 LDAV+SF Sbjct: 917 LDAVSSF 923>XP_005251535 Length = 1050 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LDAVASF 8 LDAV+SF Sbjct: 941 LDAVSSF 947>NP_001004688 Length = 347 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LDAVASFA 9 +DAVA+F+ Sbjct: 158 IDAVATFS 165>NP_001004691 Length = 312 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LDAVASFA 9 +DAVA+F+ Sbjct: 158 IDAVATFS 165>NP_001004690 Length = 312 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LDAVASFA 9 +DAVA+F+ Sbjct: 158 IDAVATFS 165Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.323 0.124 0.310 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 310,959 Number of extensions: 362 Number of successful extensions: 22 Number of sequences better than 10000.0: 22 Number of HSP's gapped: 22 Number of HSP's successfully gapped: 22 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.1 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |