Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000042 20 299 XP_006718908 20 299 XP_005271621 20 299 XP_006718907 20 299 XP_006718906 20 299 XP_005271619 20 299 XP_005271618 20 299 NP_000479 17 2528 XP_005245255 17 2528 NP_001106954 16 5631 NP_001026910 16 5631 NP_149043 16 7355 NP_115492 16 7355 NP_003889 16 7355 NP_001014402 16 7355 NP_008922 16 7355 NP_001020026 16 7355 NP_998761 16 7355 XP_005266631 16 7355 XP_006715655 16 7355 XP_006715654 16 7355 XP_005264840 16 7355 NP_055524 15 9605 NP_000951 15 9605 XP_003403541 15 9605 XP_003846688 15 9605>NP_000042 Length = 3056 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QLAKGRDDL 9 QL KGRDDL Sbjct: 2714 QLVKGRDDL 2722>XP_006718908 Length = 1708 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QLAKGRDDL 9 QL KGRDDL Sbjct: 1366 QLVKGRDDL 1374>XP_005271621 Length = 2708 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QLAKGRDDL 9 QL KGRDDL Sbjct: 2366 QLVKGRDDL 2374>XP_006718907 Length = 3050 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QLAKGRDDL 9 QL KGRDDL Sbjct: 2708 QLVKGRDDL 2716>XP_006718906 Length = 3056 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QLAKGRDDL 9 QL KGRDDL Sbjct: 2714 QLVKGRDDL 2722>XP_005271619 Length = 3056 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QLAKGRDDL 9 QL KGRDDL Sbjct: 2714 QLVKGRDDL 2722>XP_005271618 Length = 3056 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QLAKGRDDL 9 QL KGRDDL Sbjct: 2714 QLVKGRDDL 2722>NP_000479 Length = 464 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LAKGRDDL 9 +A+GRDDL Sbjct: 387 VAEGRDDL 394>XP_005245255 Length = 416 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LAKGRDDL 9 +A+GRDDL Sbjct: 339 VAEGRDDL 346>NP_001106954 Length = 457 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 KGRDDL 9 KGRDD+ Sbjct: 229 KGRDDI 234>NP_001026910 Length = 250 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 KGRDDL 9 KGRDD+ Sbjct: 229 KGRDDI 234>NP_149043 Length = 1018 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 AKGRDDL 9 A+G+DDL Sbjct: 933 ARGQDDL 939>NP_115492 Length = 490 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 AKGRDD 8 A+GRDD Sbjct: 158 ARGRDD 163>NP_003889 Length = 1496 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 AKGRDD 8 A+GRDD Sbjct: 25 ARGRDD 30>NP_001014402 Length = 490 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 AKGRDD 8 A+GRDD Sbjct: 158 ARGRDD 163>NP_008922 Length = 1029 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 LAKGRDD 8 L KG+DD Sbjct: 16 LVKGKDD 22>NP_001020026 Length = 267 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 LAKGRDD 8 L KG+DD Sbjct: 16 LVKGKDD 22>NP_998761 Length = 517 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 QLAKGRDDL 9 Q+A GR DL Sbjct: 59 QMASGRVDL 67>XP_005266631 Length = 490 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 AKGRDD 8 A+GRDD Sbjct: 158 ARGRDD 163>XP_006715655 Length = 1288 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 AKGRDD 8 A+GRDD Sbjct: 25 ARGRDD 30>XP_006715654 Length = 1495 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 AKGRDD 8 A+GRDD Sbjct: 25 ARGRDD 30>XP_005264840 Length = 1029 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 LAKGRDD 8 L KG+DD Sbjct: 16 LVKGKDD 22>NP_055524 Length = 3546 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 QLAKGRDDL 9 + +KG+DD+ Sbjct: 3125 ETSKGKDDV 3133>NP_000951 Length = 386 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 QLAKGRDD 8 QLA GR D Sbjct: 325 QLASGRRD 332>XP_003403541 Length = 208 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 LAKGRDD 8 LAK RDD Sbjct: 49 LAKERDD 55>XP_003846688 Length = 208 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 LAKGRDD 8 LAK RDD Sbjct: 49 LAKERDD 55Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.316 0.140 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 591,593 Number of extensions: 689 Number of successful extensions: 26 Number of sequences better than 10000.0: 26 Number of HSP's gapped: 26 Number of HSP's successfully gapped: 26 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.6 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |