Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_004110 19 665 NP_001139813 17 3301 NP_065768 16 5631 XP_006724654 16 5631 XP_006724653 16 5631 NP_872310 16 5631 NP_000248 15 9605 NP_001108206 15 9605 NP_065935 15 9605 NP_005138 15 9605 NP_060004 15 9605 NP_002463 15 9605 NP_001093582 15 9605 NP_005954 15 9605 NP_001035865 15 9605 NP_061909 15 9605 NP_060003 15 9605 NP_001128582 15 9605 XP_006723903 15 9605 XP_006723902 15 9605 XP_005256707 15 9605 XP_005267754 15 9605 XP_005267753 15 9605>NP_004110 Length = 993 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QLADAEEVM 9 QLADAEE M Sbjct: 946 QLADAEEAM 954>NP_001139813 Length = 535 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QLADAEEVM 9 QL+D EE+M Sbjct: 526 QLSDFEEIM 534>NP_065768 Length = 1493 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 QLADAEEV 8 QLADA+E+ Sbjct: 1417 QLADAKEL 1424>XP_006724654 Length = 1335 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 QLADAEEV 8 QLADA+E+ Sbjct: 1259 QLADAKEL 1266>XP_006724653 Length = 1377 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 QLADAEEV 8 QLADA+E+ Sbjct: 1301 QLADAKEL 1308>NP_872310 Length = 265 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 QLADAEEV 8 QLA+A+EV Sbjct: 224 QLAEAQEV 231>NP_000248 Length = 1935 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 LADAEE 7 LADAEE Sbjct: 898 LADAEE 903>NP_001108206 Length = 428 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QLADAEEVM 9 QLADA++ + Sbjct: 118 QLADAQKAL 126>NP_065935 Length = 1983 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 LADAEE 7 LADAEE Sbjct: 947 LADAEE 952>NP_005138 Length = 480 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QLADAEEVM 9 QLA+A EV+ Sbjct: 137 QLAEAYEVL 145>NP_060004 Length = 1941 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 LADAEE 7 LADAEE Sbjct: 904 LADAEE 909>NP_002463 Length = 1937 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 LADAEE 7 LADAEE Sbjct: 901 LADAEE 906>NP_001093582 Length = 1941 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 LADAEE 7 LADAEE Sbjct: 904 LADAEE 909>NP_005954 Length = 1939 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 LADAEE 7 LADAEE Sbjct: 902 LADAEE 907>NP_001035865 Length = 340 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 QLADAEEVM 9 Q+AD EVM Sbjct: 99 QMADHTEVM 107>NP_061909 Length = 370 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 QLADAEEVM 9 Q+AD EVM Sbjct: 129 QMADHTEVM 137>NP_060003 Length = 1939 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 LADAEE 7 LADAEE Sbjct: 902 LADAEE 907>NP_001128582 Length = 453 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QLADAEEVM 9 QLA+A EV+ Sbjct: 137 QLAEAYEVL 145>XP_006723903 Length = 1989 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 LADAEE 7 LADAEE Sbjct: 947 LADAEE 952>XP_006723902 Length = 1787 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 LADAEE 7 LADAEE Sbjct: 745 LADAEE 750>XP_005256707 Length = 1940 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 LADAEE 7 LADAEE Sbjct: 903 LADAEE 908>XP_005267754 Length = 1087 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 LADAEE 7 LADAEE Sbjct: 898 LADAEE 903>XP_005267753 Length = 1935 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 LADAEE 7 LADAEE Sbjct: 898 LADAEE 903Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.306 0.118 0.275 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 471,058 Number of extensions: 685 Number of successful extensions: 23 Number of sequences better than 10000.0: 23 Number of HSP's gapped: 23 Number of HSP's successfully gapped: 23 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.4 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |