Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_997698 17 4312 NP_001597 17 4312 XP_006717059 17 4312 NP_004789 16 7355 NP_710142 16 7355 XP_006712581 16 7355 XP_005246132 16 7355 NP_001073973 16 7355 NP_004612 15 9605 NP_872603 15 9605 NP_061987 15 9605 NP_001273612 15 9605 NP_065122 15 9605 NP_001161048 15 9605 XP_006718961 15 9605 XP_006717209 15 9605 XP_006717208 15 9605 XP_006717207 15 9605 XP_005272093 15 9605 XP_006714294 15 9605 NP_001161049 15 9605 NP_057312 15 9605 NP_001273611 15 9605>NP_997698 Length = 2466 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QKMMKRAVI 9 Q MM+RA+I Sbjct: 694 QDMMERAII 702>NP_001597 Length = 2436 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QKMMKRAVI 9 Q MM+RA+I Sbjct: 664 QDMMERAII 672>XP_006717059 Length = 2435 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QKMMKRAVI 9 Q MM+RA+I Sbjct: 663 QDMMERAII 671>NP_004789 Length = 747 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QKMMKRAV 8 Q+MMKR V Sbjct: 623 QQMMKRPV 630>NP_710142 Length = 899 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QKMMKRAVI 9 Q+M+KR V+ Sbjct: 713 QEMLKRMVV 721>XP_006712581 Length = 1047 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 QKMMKRAV 8 QK+M+RA+ Sbjct: 598 QKIMQRAI 605>XP_005246132 Length = 1047 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 QKMMKRAV 8 QK+M+RA+ Sbjct: 598 QKIMQRAI 605>NP_001073973 Length = 1052 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 QKMMKRAV 8 QK+M+RA+ Sbjct: 598 QKIMQRAI 605>NP_004612 Length = 931 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 QKMMKRAV 8 QK+MKR + Sbjct: 856 QKIMKRLI 863>NP_872603 Length = 425 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 QKMMKRAV 8 ++MMKRA+ Sbjct: 65 EEMMKRAL 72>NP_061987 Length = 900 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QKMMKRAVI 9 +KMMKR ++ Sbjct: 889 EKMMKRLLM 897>NP_001273612 Length = 425 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 QKMMKRAV 8 ++MMKRA+ Sbjct: 65 EEMMKRAL 72>NP_065122 Length = 862 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 QKMMKRAV 8 QK+MKR + Sbjct: 781 QKIMKRLI 788>NP_001161048 Length = 746 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 QKMMKRAV 8 QK+MKR + Sbjct: 665 QKIMKRLI 672>XP_006718961 Length = 906 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 QKMMKRAV 8 QK+MKR + Sbjct: 831 QKIMKRLI 838>XP_006717209 Length = 812 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QKMMKRAVI 9 +KMMKR ++ Sbjct: 801 EKMMKRLLM 809>XP_006717208 Length = 838 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QKMMKRAVI 9 +KMMKR ++ Sbjct: 827 EKMMKRLLM 835>XP_006717207 Length = 861 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QKMMKRAVI 9 +KMMKR ++ Sbjct: 850 EKMMKRLLM 858>XP_005272093 Length = 477 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 QKMMKRAV 8 QK+MKR + Sbjct: 396 QKIMKRLI 403>XP_006714294 Length = 464 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 QKMMKRAV 8 ++MMKRA+ Sbjct: 104 EEMMKRAL 111>NP_001161049 Length = 801 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 QKMMKRAV 8 QK+MKR + Sbjct: 720 QKIMKRLI 727>NP_057312 Length = 425 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 QKMMKRAV 8 ++MMKRA+ Sbjct: 65 EEMMKRAL 72>NP_001273611 Length = 429 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 QKMMKRAV 8 ++MMKRA+ Sbjct: 69 EEMMKRAL 76Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.338 0.132 0.316 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 269,423 Number of extensions: 364 Number of successful extensions: 23 Number of sequences better than 10000.0: 23 Number of HSP's gapped: 23 Number of HSP's successfully gapped: 23 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.6 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |