Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001895 20 299 NP_001091680 20 299 NP_001091679 20 299 XP_006713048 20 299 XP_006713047 20 299 XP_006713046 20 299 XP_005264943 20 299 NP_001124295 17 4312 NP_001370 17 4312 XP_006722744 17 4312 NP_061963 16 5631 NP_055986 16 5631 NP_061903 16 5631 NP_001257869 16 5631 NP_060639 16 5631 XP_005255257 16 5631 XP_005255256 16 5631 XP_005255255 16 5631 XP_005255254 16 5631 XP_005255252 16 5631 XP_006719162 16 5631 XP_005253462 16 5631 XP_005248601 16 5631 XP_006714716 16 5631 NP_001004727 16 5631 NP_004303 16 7355 XP_006724714 16 7355 NP_001265478 15 9605 NP_002601 15 9605 XP_006712657 15 9605 NP_001073951 15 9605>NP_001895 Length = 781 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QGFSQSFAQ 9 QGFSQSF Q Sbjct: 68 QGFSQSFTQ 76>NP_001091680 Length = 781 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QGFSQSFAQ 9 QGFSQSF Q Sbjct: 68 QGFSQSFTQ 76>NP_001091679 Length = 781 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QGFSQSFAQ 9 QGFSQSF Q Sbjct: 68 QGFSQSFTQ 76>XP_006713048 Length = 720 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QGFSQSFAQ 9 QGFSQSF Q Sbjct: 68 QGFSQSFTQ 76>XP_006713047 Length = 774 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QGFSQSFAQ 9 QGFSQSF Q Sbjct: 61 QGFSQSFTQ 69>XP_006713046 Length = 774 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QGFSQSFAQ 9 QGFSQSF Q Sbjct: 61 QGFSQSFTQ 69>XP_005264943 Length = 781 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QGFSQSFAQ 9 QGFSQSF Q Sbjct: 68 QGFSQSFTQ 76>NP_001124295 Length = 1632 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 GFSQSFAQ 9 GFS SFA+ Sbjct: 494 GFSTSFAE 501>NP_001370 Length = 1616 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 GFSQSFAQ 9 GFS SFA+ Sbjct: 478 GFSTSFAE 485>XP_006722744 Length = 1495 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 GFSQSFAQ 9 GFS SFA+ Sbjct: 357 GFSTSFAE 364>NP_061963 Length = 1047 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QGFSQSFAQ 9 +GFS SFA+ Sbjct: 124 RGFSFSFAE 132>NP_055986 Length = 1125 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 QGFSQSFAQ 9 Q F QSF Q Sbjct: 982 QAFGQSFLQ 990>NP_061903 Length = 1369 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QGFSQSFAQ 9 +GFSQ F + Sbjct: 173 EGFSQEFEE 181>NP_001257869 Length = 1111 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 QGFSQSFAQ 9 Q F QSF Q Sbjct: 968 QAFGQSFLQ 976>NP_060639 Length = 1747 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QGFSQSFAQ 9 QG +QSF++ Sbjct: 184 QGLNQSFSE 192>XP_005255257 Length = 774 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 QGFSQSFAQ 9 Q F QSF Q Sbjct: 631 QAFGQSFLQ 639>XP_005255256 Length = 780 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 QGFSQSFAQ 9 Q F QSF Q Sbjct: 637 QAFGQSFLQ 645>XP_005255255 Length = 951 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 QGFSQSFAQ 9 Q F QSF Q Sbjct: 808 QAFGQSFLQ 816>XP_005255254 Length = 1051 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 QGFSQSFAQ 9 Q F QSF Q Sbjct: 908 QAFGQSFLQ 916>XP_005255252 Length = 1124 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 QGFSQSFAQ 9 Q F QSF Q Sbjct: 981 QAFGQSFLQ 989>XP_006719162 Length = 1676 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QGFSQSFAQ 9 QG +QSF++ Sbjct: 184 QGLNQSFSE 192>XP_005253462 Length = 1747 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QGFSQSFAQ 9 QG +QSF++ Sbjct: 184 QGLNQSFSE 192>XP_005248601 Length = 899 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QGFSQSFAQ 9 +GFSQ F + Sbjct: 173 EGFSQEFEE 181>XP_006714716 Length = 1318 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 QGFSQSFAQ 9 +GFSQ F + Sbjct: 173 EGFSQEFEE 181>NP_001004727 Length = 303 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 GFSQSFAQ 9 GF SFAQ Sbjct: 144 GFMHSFAQ 151>NP_004303 Length = 388 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 FSQSFA 8 FSQSFA Sbjct: 265 FSQSFA 270>XP_006724714 Length = 343 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 FSQSFA 8 FSQSFA Sbjct: 220 FSQSFA 225>NP_001265478 Length = 456 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 GFSQSFA 8 GFS+SF+ Sbjct: 23 GFSRSFS 29>NP_002601 Length = 436 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 GFSQSFA 8 GFS+SF+ Sbjct: 23 GFSRSFS 29>XP_006712657 Length = 281 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 GFSQSFA 8 GFS+SF+ Sbjct: 23 GFSRSFS 29>NP_001073951 Length = 976 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 QGFSQSFA 8 QGF SFA Sbjct: 288 QGFRGSFA 295Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.320 0.123 0.334 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 447,750 Number of extensions: 721 Number of successful extensions: 31 Number of sequences better than 10000.0: 31 Number of HSP's gapped: 31 Number of HSP's successfully gapped: 31 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.9 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |