Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_008835 20 299 NP_001075109 20 299 NP_000954 18 1935 NP_653252 17 4312 XP_005251225 17 4312 XP_006716483 17 4312 XP_005251224 17 4312 NP_001161842 16 5631 NP_055595 16 5631 NP_000669 16 5631 XP_006715348 16 5631 XP_005249560 16 5631 NP_067640 16 7355 NP_001171890 16 7355 NP_001171891 16 7355 NP_055883 16 7355 NP_001035242 16 7355 NP_001165908 16 7355 NP_001165909 16 7355 NP_005018 16 7355 XP_005247748 16 7355 XP_005247747 16 7355 NP_006840 15 9605>NP_008835 Length = 4128 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QAYPALMVE 9 QAYPAL+VE Sbjct: 3440 QAYPALVVE 3448>NP_001075109 Length = 4097 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QAYPALMVE 9 QAYPAL+VE Sbjct: 3440 QAYPALVVE 3448>NP_000954 Length = 604 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QAYPALMVE 9 + YPAL+VE Sbjct: 488 ELYPALLVE 496>NP_653252 Length = 1463 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 YPALMVE 9 +PALMVE Sbjct: 1197 WPALMVE 1203>XP_005251225 Length = 848 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 YPALMVE 9 +PALMVE Sbjct: 582 WPALMVE 588>XP_006716483 Length = 1367 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 YPALMVE 9 +PALMVE Sbjct: 1101 WPALMVE 1107>XP_005251224 Length = 1439 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 YPALMVE 9 +PALMVE Sbjct: 1173 WPALMVE 1179>NP_001161842 Length = 1782 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 QAYPALM 7 QAYP+L+ Sbjct: 661 QAYPSLL 667>NP_055595 Length = 1698 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 QAYPALM 7 QAYP+L+ Sbjct: 577 QAYPSLL 583>NP_000669 Length = 572 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 YPALMVE 9 YPA+M E Sbjct: 204 YPAIMTE 210>XP_006715348 Length = 1734 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 QAYPALM 7 QAYP+L+ Sbjct: 609 QAYPSLL 615>XP_005249560 Length = 1750 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 QAYPALM 7 QAYP+L+ Sbjct: 629 QAYPSLL 635>NP_067640 Length = 589 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 QAYPALMV 8 Q YPAL V Sbjct: 430 QGYPALHV 437>NP_001171890 Length = 742 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 YPALMVE 9 YPA M+E Sbjct: 181 YPAFMME 187>NP_001171891 Length = 359 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 YPALMVE 9 YPA M+E Sbjct: 181 YPAFMME 187>NP_055883 Length = 708 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 YPALMVE 9 YPA M+E Sbjct: 147 YPAFMME 153>NP_001035242 Length = 325 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 YPALMVE 9 YPA M+E Sbjct: 147 YPAFMME 153>NP_001165908 Length = 784 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 YPALMVE 9 YPA M+E Sbjct: 223 YPAFMME 229>NP_001165909 Length = 401 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 YPALMVE 9 YPA M+E Sbjct: 223 YPAFMME 229>NP_005018 Length = 728 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 YPALMVE 9 +PAL+VE Sbjct: 279 FPALLVE 285>XP_005247748 Length = 474 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 QAYPALMV 8 Q YPAL V Sbjct: 315 QGYPALHV 322>XP_005247747 Length = 620 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 QAYPALMV 8 Q YPAL V Sbjct: 461 QGYPALHV 468>NP_006840 Length = 525 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 YPALMVE 9 +PAL+VE Sbjct: 59 HPALLVE 65Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.319 0.128 0.357 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 432,670 Number of extensions: 327 Number of successful extensions: 23 Number of sequences better than 10000.0: 23 Number of HSP's gapped: 23 Number of HSP's successfully gapped: 23 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.9 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |