Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001155973 19 869 NP_055903 19 869 NP_066566 16 5631 NP_997198 16 5631 NP_060175 16 7355 NP_001098024 16 7355 XP_005254553 16 7355 XP_005254552 16 7355 XP_005254551 16 7355 XP_006720646 16 7355 NP_005215 15 9605 NP_859052 15 9605 NP_001008781 15 9605 XP_005259570 15 9605 XP_005259571 15 9605 XP_005259569 15 9605 XP_005268734 15 9605 XP_006718827 15 9605 NP_689653 15 9605>NP_001155973 Length = 1833 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QAVLQTILS 9 QAVLQT+LS Sbjct: 601 QAVLQTLLS 609>NP_055903 Length = 1723 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QAVLQTILS 9 QAVLQT+LS Sbjct: 601 QAVLQTLLS 609>NP_066566 Length = 555 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 QAVLQTIL 8 QAV QTIL Sbjct: 182 QAVYQTIL 189>NP_997198 Length = 449 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QAVLQTILS 9 + VLQT+LS Sbjct: 432 EKVLQTVLS 440>NP_060175 Length = 330 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 AVLQTILS 9 AVL TILS Sbjct: 156 AVLNTILS 163>NP_001098024 Length = 330 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 AVLQTILS 9 AVL TILS Sbjct: 156 AVLNTILS 163>XP_005254553 Length = 215 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 AVLQTILS 9 AVL TILS Sbjct: 41 AVLNTILS 48>XP_005254552 Length = 316 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 AVLQTILS 9 AVL TILS Sbjct: 142 AVLNTILS 149>XP_005254551 Length = 330 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 AVLQTILS 9 AVL TILS Sbjct: 156 AVLNTILS 163>XP_006720646 Length = 330 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 AVLQTILS 9 AVL TILS Sbjct: 156 AVLNTILS 163>NP_005215 Length = 593 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 QAVLQTIL 8 QAV++T+L Sbjct: 4 QAVMETLL 11>NP_859052 Length = 698 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 QAVLQTI 7 QAVLQT+ Sbjct: 460 QAVLQTM 466>NP_001008781 Length = 4557 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QAVLQTIL 8 QAV +TIL Sbjct: 1885 QAVFETIL 1892>XP_005259570 Length = 593 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 QAVLQTIL 8 QAV++T+L Sbjct: 4 QAVMETLL 11>XP_005259571 Length = 593 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 QAVLQTIL 8 QAV++T+L Sbjct: 4 QAVMETLL 11>XP_005259569 Length = 593 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 QAVLQTIL 8 QAV++T+L Sbjct: 4 QAVMETLL 11>XP_005268734 Length = 468 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 QAVLQTILS 9 QAVL+T S Sbjct: 15 QAVLETFFS 23>XP_006718827 Length = 3479 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QAVLQTIL 8 QAV +TIL Sbjct: 775 QAVFETIL 782>NP_689653 Length = 445 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 QAVLQTILS 9 QAVL+T S Sbjct: 15 QAVLETFFS 23Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.321 0.127 0.283 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 264,543 Number of extensions: 331 Number of successful extensions: 19 Number of sequences better than 10000.0: 19 Number of HSP's gapped: 19 Number of HSP's successfully gapped: 19 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.9 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |