Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_004251 18 1482 NP_038466 18 1935 NP_444295 18 1935 NP_064516 18 1935 XP_005245404 18 1935 NP_038472 17 3301 NP_001175 17 4312 XP_006711414 16 5631 NP_001269461 16 7355 NP_056154 16 7355 NP_001269460 16 7355 NP_689775 16 7355 NP_852107 16 7355 XP_006723822 16 7355 XP_006716359 16 7355 XP_006716358 16 7355 XP_006716357 16 7355 NP_061720 16 7355 NP_001800 15 9605 NP_001278261 15 9605 NP_001034553 15 9605 NP_001032590 15 9605 NP_005465 15 9605 NP_001015053 15 9605 NP_001265522 15 9605 NP_005580 15 9605 NP_001157101 15 9605 XP_005276345 15 9605 XP_006721692 15 9605 XP_005256964 15 9605 XP_005256963 15 9605 XP_005256962 15 9605 XP_005256961 15 9605 XP_005249985 15 9605 XP_006710935 15 9605 XP_003846678 15 9605>NP_004251 Length = 1208 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QALLTLQQG 9 QALLTL QG Sbjct: 686 QALLTLLQG 694>NP_038466 Length = 589 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 QALLTLQQG 9 QALL +QQG Sbjct: 461 QALLQIQQG 469>NP_444295 Length = 561 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 QALLTLQQG 9 QALL +QQG Sbjct: 433 QALLQIQQG 441>NP_064516 Length = 601 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 QALLTLQQG 9 QALL +QQG Sbjct: 467 QALLQIQQG 475>XP_005245404 Length = 565 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 QALLTLQQG 9 QALL +QQG Sbjct: 467 QALLQIQQG 475>NP_038472 Length = 624 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QALLTLQQG 9 QAL+ +QQG Sbjct: 453 QALMQIQQG 461>NP_001175 Length = 2644 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QALLTLQQG 9 QAL+ LQ+G Sbjct: 1971 QALIVLQKG 1979>XP_006711414 Length = 618 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 ALLTLQQG 9 ALLT QQG Sbjct: 6 ALLTHQQG 13>NP_001269461 Length = 1102 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LTLQQG 9 LTLQQG Sbjct: 552 LTLQQG 557>NP_056154 Length = 1102 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LTLQQG 9 LTLQQG Sbjct: 552 LTLQQG 557>NP_001269460 Length = 1102 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LTLQQG 9 LTLQQG Sbjct: 552 LTLQQG 557>NP_689775 Length = 1023 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LTLQQG 9 LTLQQG Sbjct: 731 LTLQQG 736>NP_852107 Length = 1102 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LTLQQG 9 LTLQQG Sbjct: 552 LTLQQG 557>XP_006723822 Length = 1111 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LTLQQG 9 LTLQQG Sbjct: 561 LTLQQG 566>XP_006716359 Length = 1028 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LTLQQG 9 LTLQQG Sbjct: 736 LTLQQG 741>XP_006716358 Length = 1028 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LTLQQG 9 LTLQQG Sbjct: 736 LTLQQG 741>XP_006716357 Length = 1028 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LTLQQG 9 LTLQQG Sbjct: 736 LTLQQG 741>NP_061720 Length = 4024 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QALLTLQQG 9 Q +LT+Q+G Sbjct: 1395 QQILTIQRG 1403>NP_001800 Length = 140 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QALLTLQQ 8 QALL LQ+ Sbjct: 89 QALLALQE 96>NP_001278261 Length = 841 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 LLTLQQG 9 LLT+Q+G Sbjct: 653 LLTMQEG 659>NP_001034553 Length = 1323 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 LLTLQQG 9 LLT+Q+G Sbjct: 1135 LLTMQEG 1141>NP_001032590 Length = 942 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QALLTLQQ 8 QALLTL + Sbjct: 128 QALLTLDE 135>NP_005465 Length = 1122 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QALLTLQQG 9 QAL +L+QG Sbjct: 402 QALQSLRQG 410>NP_001015053 Length = 1123 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QALLTLQQG 9 QAL +L+QG Sbjct: 403 QALQSLRQG 411>NP_001265522 Length = 522 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 LLTLQQG 9 L+TL+QG Sbjct: 109 LITLEQG 115>NP_005580 Length = 535 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 LLTLQQG 9 L+TL+QG Sbjct: 122 LITLEQG 128>NP_001157101 Length = 861 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 QALLTLQQ 8 QALLTL++ Sbjct: 603 QALLTLRR 610>XP_005276345 Length = 247 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 QALLTLQQG 9 +ALLT Q G Sbjct: 128 EALLTSQMG 136>XP_006721692 Length = 1081 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QALLTLQQG 9 QAL +L+QG Sbjct: 361 QALQSLRQG 369>XP_005256964 Length = 1118 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QALLTLQQG 9 QAL +L+QG Sbjct: 398 QALQSLRQG 406>XP_005256963 Length = 1122 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QALLTLQQG 9 QAL +L+QG Sbjct: 402 QALQSLRQG 410>XP_005256962 Length = 1122 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QALLTLQQG 9 QAL +L+QG Sbjct: 402 QALQSLRQG 410>XP_005256961 Length = 1123 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QALLTLQQG 9 QAL +L+QG Sbjct: 403 QALQSLRQG 411>XP_005249985 Length = 247 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 QALLTLQQG 9 +ALLT Q G Sbjct: 128 EALLTSQMG 136>XP_006710935 Length = 1280 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QALLTLQQ 8 QALLTL + Sbjct: 195 QALLTLDE 202Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QALLTLQQ 8 QALLTL + Sbjct: 466 QALLTLDE 473>XP_003846678 Length = 243 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 QALLTLQQG 9 +ALLT Q G Sbjct: 95 EALLTSQMG 103Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 QALLTLQQG 9 +ALLT Q G Sbjct: 212 EALLTSQMG 220Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.317 0.130 0.325 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 407,942 Number of extensions: 659 Number of successful extensions: 38 Number of sequences better than 10000.0: 36 Number of HSP's gapped: 38 Number of HSP's successfully gapped: 38 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.8 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |