Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001243398 20 390 NP_036462 20 390 NP_001243397 20 390 NP_001092882 20 390 NP_006757 20 390 NP_001092883 20 390 XP_005269721 20 390 XP_005273706 20 390 NP_758859 17 4312 NP_071900 17 4312 NP_056076 17 4312 XP_005266019 17 4312 XP_005266018 17 4312 XP_005266017 17 4312 XP_006714965 17 4312 XP_006714964 17 4312 XP_005266016 17 4312 NP_036520 16 5631 NP_055940 16 5631 NP_620137 16 5631 NP_001139504 16 5631 XP_005258732 16 5631 XP_005258731 16 5631 XP_005258730 16 5631 NP_001138666 16 7355 NP_942147 16 7355 XP_005259228 16 7355 XP_005259227 16 7355 XP_005259226 16 7355 XP_006721140 16 7355 NP_005465 15 9605 NP_001015053 15 9605 NP_008977 15 9605 NP_796375 15 9605 XP_005259729 15 9605 XP_005259728 15 9605 XP_006721692 15 9605 XP_005256964 15 9605 XP_005256963 15 9605 XP_005256962 15 9605 XP_005256961 15 9605 XP_006711991 15 9605>NP_001243398 Length = 1781 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QAIQSLTQE 9 QA+QSLTQE Sbjct: 1251 QAVQSLTQE 1259>NP_036462 Length = 2073 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QAIQSLTQE 9 QA+QSLTQE Sbjct: 1543 QAVQSLTQE 1551>NP_001243397 Length = 1890 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QAIQSLTQE 9 QA+QSLTQE Sbjct: 1360 QAVQSLTQE 1368>NP_001092882 Length = 2004 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QAIQSLTQE 9 QA+QSLTQE Sbjct: 1426 QAVQSLTQE 1434>NP_006757 Length = 2004 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QAIQSLTQE 9 QA+QSLTQE Sbjct: 1426 QAVQSLTQE 1434>NP_001092883 Length = 2004 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QAIQSLTQE 9 QA+QSLTQE Sbjct: 1426 QAVQSLTQE 1434>XP_005269721 Length = 2073 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QAIQSLTQE 9 QA+QSLTQE Sbjct: 1543 QAVQSLTQE 1551>XP_005273706 Length = 1997 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 QAIQSLTQE 9 QA+QSLTQE Sbjct: 1419 QAVQSLTQE 1427>NP_758859 Length = 2427 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 QAIQSLTQ 8 QA++SLTQ Sbjct: 2259 QAVKSLTQ 2266>NP_071900 Length = 2696 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 QAIQSLTQ 8 QA++SLTQ Sbjct: 2528 QAVKSLTQ 2535>NP_056076 Length = 1498 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 QAIQSLTQ 8 QA+QSLT+ Sbjct: 598 QALQSLTE 605>XP_005266019 Length = 1194 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 QAIQSLTQ 8 QA++SLTQ Sbjct: 1026 QAVKSLTQ 1033>XP_005266018 Length = 2427 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 QAIQSLTQ 8 QA++SLTQ Sbjct: 2259 QAVKSLTQ 2266>XP_005266017 Length = 2427 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 QAIQSLTQ 8 QA++SLTQ Sbjct: 2259 QAVKSLTQ 2266>XP_006714965 Length = 2427 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 QAIQSLTQ 8 QA++SLTQ Sbjct: 2259 QAVKSLTQ 2266>XP_006714964 Length = 2696 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 QAIQSLTQ 8 QA++SLTQ Sbjct: 2528 QAVKSLTQ 2535>XP_005266016 Length = 2696 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 QAIQSLTQ 8 QA++SLTQ Sbjct: 2528 QAVKSLTQ 2535>NP_036520 Length = 172 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QAIQSLTQ 8 QA+Q LTQ Sbjct: 69 QALQELTQ 76>NP_055940 Length = 1608 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QAIQSLTQ 8 QA+Q LTQ Sbjct: 371 QALQELTQ 378>NP_620137 Length = 810 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QAIQSLTQ 8 Q IQS+TQ Sbjct: 127 QTIQSITQ 134>NP_001139504 Length = 777 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QAIQSLTQ 8 Q IQS+TQ Sbjct: 127 QTIQSITQ 134>XP_005258732 Length = 1605 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QAIQSLTQ 8 QA+Q LTQ Sbjct: 371 QALQELTQ 378>XP_005258731 Length = 1606 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QAIQSLTQ 8 QA+Q LTQ Sbjct: 371 QALQELTQ 378>XP_005258730 Length = 1606 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QAIQSLTQ 8 QA+Q LTQ Sbjct: 371 QALQELTQ 378>NP_001138666 Length = 69 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QAIQSLTQE 9 QA+Q ++QE Sbjct: 32 QAVQQVSQE 40>NP_942147 Length = 640 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 QAIQSLTQE 9 +A+Q+L+QE Sbjct: 310 EALQALSQE 318>XP_005259228 Length = 538 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 QAIQSLTQE 9 +A+Q+L+QE Sbjct: 305 EALQALSQE 313>XP_005259227 Length = 601 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 QAIQSLTQE 9 +A+Q+L+QE Sbjct: 305 EALQALSQE 313>XP_005259226 Length = 635 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 QAIQSLTQE 9 +A+Q+L+QE Sbjct: 305 EALQALSQE 313>XP_006721140 Length = 262 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QAIQSLTQE 9 QAIQ+ T+E Sbjct: 152 QAIQASTEE 160>NP_005465 Length = 1122 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QAIQSLTQ 8 QA+QSL Q Sbjct: 402 QALQSLRQ 409>NP_001015053 Length = 1123 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QAIQSLTQ 8 QA+QSL Q Sbjct: 403 QALQSLRQ 410>NP_008977 Length = 1016 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QAIQSLTQE 9 + +QSLT+E Sbjct: 183 EQVQSLTKE 191>NP_796375 Length = 468 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 QAIQSLTQ 8 QA++SLT+ Sbjct: 119 QALESLTE 126>XP_005259729 Length = 510 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 QAIQSLTQ 8 QA++SLT+ Sbjct: 119 QALESLTE 126>XP_005259728 Length = 511 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 QAIQSLTQ 8 QA++SLT+ Sbjct: 119 QALESLTE 126>XP_006721692 Length = 1081 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QAIQSLTQ 8 QA+QSL Q Sbjct: 361 QALQSLRQ 368>XP_005256964 Length = 1118 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QAIQSLTQ 8 QA+QSL Q Sbjct: 398 QALQSLRQ 405>XP_005256963 Length = 1122 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QAIQSLTQ 8 QA+QSL Q Sbjct: 402 QALQSLRQ 409>XP_005256962 Length = 1122 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QAIQSLTQ 8 QA+QSL Q Sbjct: 402 QALQSLRQ 409>XP_005256961 Length = 1123 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 QAIQSLTQ 8 QA+QSL Q Sbjct: 403 QALQSLRQ 410>XP_006711991 Length = 970 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 QAIQSLTQE 9 + +QSLT+E Sbjct: 183 EQVQSLTKE 191Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.298 0.108 0.236 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 292,889 Number of extensions: 368 Number of successful extensions: 42 Number of sequences better than 10000.0: 42 Number of HSP's gapped: 42 Number of HSP's successfully gapped: 42 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.3 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |