Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_722576 20 299 XP_005262424 20 299 NP_115642 17 2528 NP_689483 17 3301 NP_001098060 17 3301 NP_001098059 17 3301 NP_001098058 17 3301 NP_001098057 17 3301 XP_005258125 17 3301 XP_006722234 17 3301 NP_001157862 17 4312 NP_001157861 17 4312 NP_001157860 17 4312 NP_001157859 17 4312 NP_001157858 17 4312 NP_057424 17 4312 NP_775885 16 5631 NP_001004060 16 5631 NP_073606 16 5631 NP_001036039 16 5631 NP_001004067 16 5631 NP_005389 16 5631 XP_006725258 16 5631 XP_006721059 16 5631 XP_005255375 16 5631 XP_005255025 16 5631 XP_006710314 16 5631 NP_055102 16 5631 NP_068765 15 9605 XP_005262513 15 9605 XP_006724842 15 9605 XP_006724841 15 9605 XP_006724840 15 9605 XP_005262512 15 9605 XP_005262511 15 9605 XP_006724839 15 9605 XP_005262510 15 9605 XP_005262509 15 9605 XP_005266713 15 9605 XP_005252430 15 9605 NP_055728 15 9605>NP_722576 Length = 3080 Score = 20.4 bits (41), Expect = 299 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 PTSQMVEF 8 PTSQMVEF Sbjct: 1856 PTSQMVEF 1863>XP_005262424 Length = 2875 Score = 20.4 bits (41), Expect = 299 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 PTSQMVEF 8 PTSQMVEF Sbjct: 1651 PTSQMVEF 1658>NP_115642 Length = 1984 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 PTSQMVEF 8 PT QMVE+ Sbjct: 532 PTPQMVEY 539>NP_689483 Length = 901 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 PTSQMVEF 8 P SQ+VEF Sbjct: 208 PESQLVEF 215>NP_001098060 Length = 901 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 PTSQMVEF 8 P SQ+VEF Sbjct: 208 PESQLVEF 215>NP_001098059 Length = 901 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 PTSQMVEF 8 P SQ+VEF Sbjct: 208 PESQLVEF 215>NP_001098058 Length = 901 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 PTSQMVEF 8 P SQ+VEF Sbjct: 208 PESQLVEF 215>NP_001098057 Length = 901 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 PTSQMVEF 8 P SQ+VEF Sbjct: 208 PESQLVEF 215>XP_005258125 Length = 901 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 PTSQMVEF 8 P SQ+VEF Sbjct: 208 PESQLVEF 215>XP_006722234 Length = 901 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 PTSQMVEF 8 P SQ+VEF Sbjct: 208 PESQLVEF 215>NP_001157862 Length = 827 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 PTSQMVEFS 9 PT+ M++FS Sbjct: 735 PTTSMLDFS 743>NP_001157861 Length = 1391 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 PTSQMVEFS 9 PT+ M++FS Sbjct: 735 PTTSMLDFS 743>NP_001157860 Length = 1504 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 PTSQMVEFS 9 PT+ M++FS Sbjct: 735 PTTSMLDFS 743>NP_001157859 Length = 1509 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 PTSQMVEFS 9 PT+ M++FS Sbjct: 735 PTTSMLDFS 743>NP_001157858 Length = 1609 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 PTSQMVEFS 9 PT+ M++FS Sbjct: 735 PTTSMLDFS 743>NP_057424 Length = 1601 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 PTSQMVEFS 9 PT+ M++FS Sbjct: 735 PTTSMLDFS 743>NP_775885 Length = 1222 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 PTSQMVE 7 P+SQM+E Sbjct: 937 PSSQMIE 943>NP_001004060 Length = 1267 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 PTSQMVE 7 P+SQM+E Sbjct: 937 PSSQMIE 943>NP_073606 Length = 619 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 PTSQMV 6 PTSQMV Sbjct: 419 PTSQMV 424>NP_001036039 Length = 618 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 PTSQMV 6 PTSQMV Sbjct: 419 PTSQMV 424>NP_001004067 Length = 1222 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 PTSQMVE 7 P+SQM+E Sbjct: 937 PSSQMIE 943>NP_005389 Length = 317 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 PTSQMVEF 8 PT Q +EF Sbjct: 227 PTEQKIEF 234>XP_006725258 Length = 1267 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 PTSQMVE 7 P+SQM+E Sbjct: 937 PSSQMIE 943>XP_006721059 Length = 294 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 PTSQMVE 7 P+SQM+E Sbjct: 9 PSSQMIE 15>XP_005255375 Length = 1267 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 PTSQMVE 7 P+SQM+E Sbjct: 937 PSSQMIE 943>XP_005255025 Length = 618 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 PTSQMV 6 PTSQMV Sbjct: 418 PTSQMV 423>XP_006710314 Length = 193 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 PTSQMVE 7 P+SQM+E Sbjct: 9 PSSQMIE 15>NP_055102 Length = 1222 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 PTSQMVE 7 P+SQM+E Sbjct: 937 PSSQMIE 943>NP_068765 Length = 1711 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 PTSQMVEFS 9 PTS + EFS Sbjct: 862 PTSVVSEFS 870>XP_005262513 Length = 1655 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 PTSQMVEFS 9 PTS + EFS Sbjct: 862 PTSVVSEFS 870>XP_006724842 Length = 1687 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 PTSQMVEFS 9 PTS + EFS Sbjct: 764 PTSVVSEFS 772>XP_006724841 Length = 1687 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 PTSQMVEFS 9 PTS + EFS Sbjct: 764 PTSVVSEFS 772>XP_006724840 Length = 1785 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 PTSQMVEFS 9 PTS + EFS Sbjct: 862 PTSVVSEFS 870>XP_005262512 Length = 1785 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 PTSQMVEFS 9 PTS + EFS Sbjct: 862 PTSVVSEFS 870>XP_005262511 Length = 1785 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 PTSQMVEFS 9 PTS + EFS Sbjct: 862 PTSVVSEFS 870>XP_006724839 Length = 1785 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 PTSQMVEFS 9 PTS + EFS Sbjct: 862 PTSVVSEFS 870>XP_005262510 Length = 1785 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 PTSQMVEFS 9 PTS + EFS Sbjct: 862 PTSVVSEFS 870>XP_005262509 Length = 1785 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 PTSQMVEFS 9 PTS + EFS Sbjct: 862 PTSVVSEFS 870>XP_005266713 Length = 1131 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 PTSQMVE 7 PT QMV+ Sbjct: 477 PTGQMVQ 483>XP_005252430 Length = 363 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 PTSQMVEF 8 PTS ++EF Sbjct: 151 PTSVLMEF 158>NP_055728 Length = 1131 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 PTSQMVE 7 PT QMV+ Sbjct: 477 PTGQMVQ 483Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.309 0.116 0.308 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 463,910 Number of extensions: 898 Number of successful extensions: 41 Number of sequences better than 10000.0: 41 Number of HSP's gapped: 41 Number of HSP's successfully gapped: 41 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.6 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |