Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000213 20 509 NP_001087241 20 509 XP_005265799 20 509 XP_005265798 20 509 XP_005265797 20 509 NP_060597 17 3301 NP_001159434 17 3301 NP_776065 17 3301 NP_076991 17 3301 NP_059119 17 4312 XP_005263119 17 4312 NP_061728 16 5631 NP_113683 16 5631 NP_113684 16 5631 NP_079146 16 7355 NP_004455 16 7355 NP_061122 15 9605 NP_001363 15 9605 NP_060024 15 9605 NP_001138696 15 9605 XP_006721528 15 9605 XP_006720669 15 9605 XP_006720667 15 9605 NP_001033729 15 9605>NP_000213 Length = 976 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 PTFKQSVQL 9 PTFKQ VQL Sbjct: 915 PTFKQIVQL 923>NP_001087241 Length = 972 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 PTFKQSVQL 9 PTFKQ VQL Sbjct: 911 PTFKQIVQL 919>XP_005265799 Length = 973 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 PTFKQSVQL 9 PTFKQ VQL Sbjct: 912 PTFKQIVQL 920>XP_005265798 Length = 976 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 PTFKQSVQL 9 PTFKQ VQL Sbjct: 915 PTFKQIVQL 923>XP_005265797 Length = 977 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 PTFKQSVQL 9 PTFKQ VQL Sbjct: 916 PTFKQIVQL 924>NP_060597 Length = 826 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 PTFKQSVQ 8 P F+QSVQ Sbjct: 454 PNFQQSVQ 461>NP_001159434 Length = 786 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 PTFKQSVQ 8 P F+QSVQ Sbjct: 414 PNFQQSVQ 421>NP_776065 Length = 825 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 PTFKQSVQ 8 P F+QSVQ Sbjct: 453 PNFQQSVQ 460>NP_076991 Length = 562 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 PTFKQSVQL 9 P FKQ VQ+ Sbjct: 28 PDFKQHVQI 36>NP_059119 Length = 657 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 PTFKQSVQ 8 P FKQ++Q Sbjct: 160 PEFKQAIQ 167>XP_005263119 Length = 657 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 PTFKQSVQ 8 P FKQ++Q Sbjct: 160 PEFKQAIQ 167>NP_061728 Length = 948 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 PTFKQSV 7 PTF QSV Sbjct: 240 PTFAQSV 246>NP_113683 Length = 824 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 PTFKQSV 7 PTF QSV Sbjct: 240 PTFAQSV 246>NP_113684 Length = 808 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 PTFKQSV 7 PTF QSV Sbjct: 240 PTFAQSV 246>NP_079146 Length = 1606 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 PTFKQS 6 PTFKQ+ Sbjct: 916 PTFKQA 921>NP_004455 Length = 268 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 PTFKQSVQ 8 P FKQS Q Sbjct: 217 PRFKQSEQ 224>NP_061122 Length = 693 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 PTFKQSVQL 9 PT +Q VQL Sbjct: 678 PTVQQIVQL 686>NP_001363 Length = 4486 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 PTFKQSV 7 PT KQS+ Sbjct: 3005 PTVKQSI 3011>NP_060024 Length = 1801 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TFKQSVQL 9 TFK +VQL Sbjct: 82 TFKLTVQL 89>NP_001138696 Length = 693 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 PTFKQSVQL 9 PT +Q VQL Sbjct: 678 PTVQQIVQL 686>XP_006721528 Length = 3869 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 PTFKQSV 7 PT KQS+ Sbjct: 3005 PTVKQSI 3011>XP_006720669 Length = 564 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 PTFKQSVQL 9 PT +Q VQL Sbjct: 549 PTVQQIVQL 557>XP_006720667 Length = 684 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 PTFKQSVQL 9 PT +Q VQL Sbjct: 669 PTVQQIVQL 677>NP_001033729 Length = 693 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 PTFKQSVQL 9 PT +Q VQL Sbjct: 678 PTVQQIVQL 686Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.318 0.127 0.350 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 365,354 Number of extensions: 471 Number of successful extensions: 24 Number of sequences better than 10000.0: 24 Number of HSP's gapped: 24 Number of HSP's successfully gapped: 24 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.8 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |