Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_065386 17 3301 XP_005268986 17 3301 XP_006712163 17 3301 XP_005264606 17 3301 XP_006712161 17 3301 XP_005264605 17 3301 XP_005264604 17 3301 NP_542942 17 4312 XP_006725464 17 4312 XP_006725463 17 4312 XP_005261395 17 4312 NP_001073964 16 5631 NP_258428 16 5631 NP_001007467 16 5631 NP_064630 16 5631 NP_001001890 16 5631 NP_001745 16 5631 NP_848593 16 5631 XP_005261126 16 5631 XP_005261125 16 5631 XP_006718220 16 5631 XP_006718219 16 5631 XP_006718218 16 5631 XP_006715861 16 5631 XP_006715860 16 5631 XP_005267114 16 5631 NP_057520 16 7355 NP_776175 16 7355 NP_064505 16 7355 NP_115791 16 7355 NP_690851 16 7355 NP_001156794 16 7355 NP_001156793 16 7355 XP_005255298 16 7355 XP_005254368 16 7355 XP_005254367 16 7355 XP_006720536 16 7355 XP_006715858 16 7355 XP_006715857 16 7355 XP_006712699 16 7355 XP_006712698 16 7355 XP_006712697 16 7355 NP_443143 15 9605 XP_006722442 15 9605 NP_208382 15 9605 NP_001012986 15 9605>NP_065386 Length = 179 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 RLSSRLST 9 RLS+RLST Sbjct: 124 RLSNRLST 131>XP_005268986 Length = 179 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 RLSSRLST 9 RLS+RLST Sbjct: 124 RLSNRLST 131>XP_006712163 Length = 363 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 PRLSSRLS 8 PRLS RLS Sbjct: 300 PRLSPRLS 307>XP_005264606 Length = 399 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 PRLSSRLS 8 PRLS RLS Sbjct: 336 PRLSPRLS 343>XP_006712161 Length = 399 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 PRLSSRLS 8 PRLS RLS Sbjct: 336 PRLSPRLS 343>XP_005264605 Length = 407 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 PRLSSRLS 8 PRLS RLS Sbjct: 344 PRLSPRLS 351>XP_005264604 Length = 412 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 PRLSSRLS 8 PRLS RLS Sbjct: 349 PRLSPRLS 356>NP_542942 Length = 543 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 PRLSSRLST 9 PR+S +LST Sbjct: 169 PRVSKQLST 177>XP_006725464 Length = 543 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 PRLSSRLST 9 PR+S +LST Sbjct: 169 PRVSKQLST 177>XP_006725463 Length = 543 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 PRLSSRLST 9 PR+S +LST Sbjct: 169 PRVSKQLST 177>XP_005261395 Length = 543 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 PRLSSRLST 9 PR+S +LST Sbjct: 169 PRVSKQLST 177>NP_001073964 Length = 2968 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 PRLSSRLS 8 PRL+ RLS Sbjct: 256 PRLAERLS 263>NP_258428 Length = 779 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 PRLSSRL 7 PRL+SRL Sbjct: 56 PRLASRL 62>NP_001007467 Length = 678 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 PRLSSRLST 9 PRL S LST Sbjct: 402 PRLCSYLST 410>NP_064630 Length = 1543 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 PRLSSRLST 9 PRL S LST Sbjct: 402 PRLCSYLST 410>NP_001001890 Length = 453 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 LSSRLST 9 LSSRLST Sbjct: 290 LSSRLST 296>NP_001745 Length = 480 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 LSSRLST 9 LSSRLST Sbjct: 317 LSSRLST 323>NP_848593 Length = 618 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 PRLSSRLST 9 P LS +LST Sbjct: 370 PHLSDKLST 378>XP_005261126 Length = 416 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 LSSRLST 9 LSSRLST Sbjct: 253 LSSRLST 259>XP_005261125 Length = 468 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 LSSRLST 9 LSSRLST Sbjct: 305 LSSRLST 311>XP_006718220 Length = 391 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 PRLSSRLST 9 P LS +LST Sbjct: 370 PHLSDKLST 378>XP_006718219 Length = 417 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 PRLSSRLST 9 P LS +LST Sbjct: 370 PHLSDKLST 378>XP_006718218 Length = 507 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 PRLSSRLST 9 P LS +LST Sbjct: 259 PHLSDKLST 267>XP_006715861 Length = 2189 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 PRLSSRLS 8 PRL+ RLS Sbjct: 256 PRLAERLS 263>XP_006715860 Length = 2968 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 PRLSSRLS 8 PRL+ RLS Sbjct: 256 PRLAERLS 263>XP_005267114 Length = 1543 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 PRLSSRLST 9 PRL S LST Sbjct: 402 PRLCSYLST 410>NP_057520 Length = 1012 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 RLSSRLST 9 R SSRLST Sbjct: 326 RRSSRLST 333>NP_776175 Length = 1150 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 RLSSRLST 9 RLS RLST Sbjct: 553 RLSFRLST 560>NP_064505 Length = 1555 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 PRLSSRLST 9 PR++SR+ T Sbjct: 693 PRINSRILT 701>NP_115791 Length = 1154 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 PRLSSRLS 8 PR+S RLS Sbjct: 883 PRVSPRLS 890>NP_690851 Length = 280 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 PRLSSRL 7 PR+SSR+ Sbjct: 31 PRMSSRI 37>NP_001156794 Length = 649 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 PRLSSRLS 8 P LS+RLS Sbjct: 621 PELSARLS 628>NP_001156793 Length = 696 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 PRLSSRLS 8 P LS+RLS Sbjct: 668 PELSARLS 675>XP_005255298 Length = 280 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 PRLSSRL 7 PR+SSR+ Sbjct: 31 PRMSSRI 37>XP_005254368 Length = 712 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 RLSSRLST 9 RLS RLST Sbjct: 553 RLSFRLST 560>XP_005254367 Length = 1031 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 RLSSRLST 9 RLS RLST Sbjct: 434 RLSFRLST 441>XP_006720536 Length = 1072 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 RLSSRLST 9 RLS RLST Sbjct: 475 RLSFRLST 482>XP_006715858 Length = 1267 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 PRLSSRLS 8 PR+S RLS Sbjct: 996 PRVSPRLS 1003>XP_006715857 Length = 1268 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 PRLSSRLS 8 PR+S RLS Sbjct: 997 PRVSPRLS 1004>XP_006712699 Length = 1544 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 PRLSSRLST 9 PR++SR+ T Sbjct: 682 PRINSRILT 690>XP_006712698 Length = 1547 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 PRLSSRLST 9 PR++SR+ T Sbjct: 693 PRINSRILT 701>XP_006712697 Length = 1549 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 PRLSSRLST 9 PR++SR+ T Sbjct: 687 PRINSRILT 695>NP_443143 Length = 840 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PRLSSRLST 9 P L +R+ST Sbjct: 60 PELETRMST 68>XP_006722442 Length = 565 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PRLSSRLST 9 P L +R+ST Sbjct: 60 PELETRMST 68>NP_208382 Length = 648 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 PRLSSRL 7 PRL SRL Sbjct: 37 PRLRSRL 43>NP_001012986 Length = 249 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 PRLSSRLS 8 PR+ SRL+ Sbjct: 108 PRIDSRLA 115Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.311 0.120 0.306 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 317,506 Number of extensions: 463 Number of successful extensions: 46 Number of sequences better than 10000.0: 46 Number of HSP's gapped: 46 Number of HSP's successfully gapped: 46 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.6 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |