Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_722576 20 390 XP_005262424 20 390 NP_001399 17 4312 XP_006710468 17 4312 XP_005270637 17 4312 NP_001273983 16 7355 NP_003430 16 7355 NP_056374 16 7355 XP_006722501 16 7355 XP_005258301 16 7355 XP_005258300 16 7355 XP_005250622 16 7355 XP_006716175 16 7355 NP_005156 15 9605 NP_149052 15 9605 XP_005258006 15 9605 XP_005258004 15 9605 XP_006710201 15 9605>NP_722576 Length = 3080 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 PRESAMATS 9 PRES+MATS Sbjct: 1499 PRESSMATS 1507>XP_005262424 Length = 2875 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 PRESAMATS 9 PRES+MATS Sbjct: 1294 PRESSMATS 1302>NP_001399 Length = 2923 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 PRESAMAT 8 PR SA+AT Sbjct: 267 PRRSALAT 274>XP_006710468 Length = 2916 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 PRESAMAT 8 PR SA+AT Sbjct: 267 PRRSALAT 274>XP_005270637 Length = 2921 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 PRESAMAT 8 PR SA+AT Sbjct: 267 PRRSALAT 274>NP_001273983 Length = 527 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 PRESAMATS 9 PR+ AMA++ Sbjct: 173 PRDQAMASA 181>NP_003430 Length = 563 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 PRESAMATS 9 PR+ AMA++ Sbjct: 209 PRDQAMASA 217>NP_056374 Length = 1596 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RESAMATS 9 RE+ MATS Sbjct: 544 REAVMATS 551>XP_006722501 Length = 1403 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RESAMATS 9 RE+ MATS Sbjct: 544 REAVMATS 551>XP_005258301 Length = 1539 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RESAMATS 9 RE+ MATS Sbjct: 544 REAVMATS 551>XP_005258300 Length = 1596 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RESAMATS 9 RE+ MATS Sbjct: 544 REAVMATS 551>XP_005250622 Length = 321 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 PRESAMATS 9 PR+ AMA++ Sbjct: 209 PRDQAMASA 217>XP_006716175 Length = 563 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 PRESAMATS 9 PR+ AMA++ Sbjct: 209 PRDQAMASA 217>NP_005156 Length = 364 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 PRESAMAT 8 P E AMAT Sbjct: 246 PEEIAMAT 253>NP_149052 Length = 813 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 ESAMATS 9 ESAMAT+ Sbjct: 650 ESAMATA 656>XP_005258006 Length = 364 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 PRESAMAT 8 P E AMAT Sbjct: 246 PEEIAMAT 253>XP_005258004 Length = 451 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 PRESAMAT 8 P E AMAT Sbjct: 333 PEEIAMAT 340>XP_006710201 Length = 333 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 PRESAMATS 9 PR A+ATS Sbjct: 243 PRAPAIATS 251Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.296 0.0999 0.247 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 338,407 Number of extensions: 262 Number of successful extensions: 18 Number of sequences better than 10000.0: 18 Number of HSP's gapped: 18 Number of HSP's successfully gapped: 18 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.3 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |