Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_002871 19 665 XP_005265416 19 665 XP_005265415 19 665 XP_005265414 19 665 XP_005265412 19 665 NP_004324 19 869 XP_005250102 19 869 NP_001243125 18 1935 NP_001645 18 1935 XP_006724592 18 1935 XP_006722488 17 2528 XP_006722487 17 2528 XP_006722486 17 2528 XP_006722485 17 2528 XP_005266720 17 2528 XP_006722484 17 2528 XP_005266717 17 2528 XP_005266715 17 2528 NP_116098 17 4312 XP_006718108 17 4312 NP_291025 16 5631 NP_620162 16 7355 NP_001271330 16 7355 NP_653267 16 7355 XP_005250103 16 7355 XP_005264932 16 7355 XP_006713036 16 7355 XP_005264930 16 7355 NP_001185617 15 9605 NP_001003680 15 9605 NP_001185616 15 9605 NP_002294 15 9605 NP_001003679 15 9605 NP_001185618 15 9605 NP_113678 15 9605>NP_002871 Length = 648 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 PQILTSIEL 9 PQIL+SIEL Sbjct: 600 PQILSSIEL 608>XP_005265416 Length = 534 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 PQILTSIEL 9 PQIL+SIEL Sbjct: 486 PQILSSIEL 494>XP_005265415 Length = 567 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 PQILTSIEL 9 PQIL+SIEL Sbjct: 519 PQILSSIEL 527>XP_005265414 Length = 615 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 PQILTSIEL 9 PQIL+SIEL Sbjct: 567 PQILSSIEL 575>XP_005265412 Length = 648 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 PQILTSIEL 9 PQIL+SIEL Sbjct: 600 PQILSSIEL 608>NP_004324 Length = 766 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 PQILTSIEL 9 PQIL SIEL Sbjct: 708 PQILASIEL 716Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 PQILTS 6 PQILTS Sbjct: 328 PQILTS 333>XP_005250102 Length = 767 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 PQILTSIEL 9 PQIL SIEL Sbjct: 708 PQILASIEL 716Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 PQILTS 6 PQILTS Sbjct: 328 PQILTS 333>NP_001243125 Length = 609 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 PQILTSIEL 9 PQIL +IEL Sbjct: 564 PQILATIEL 572>NP_001645 Length = 606 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 PQILTSIEL 9 PQIL +IEL Sbjct: 561 PQILATIEL 569>XP_006724592 Length = 611 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 PQILTSIEL 9 PQIL +IEL Sbjct: 566 PQILATIEL 574>XP_006722488 Length = 1084 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 PQILTSIE 8 PQ+LTSI+ Sbjct: 75 PQLLTSID 82>XP_006722487 Length = 1102 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 PQILTSIE 8 PQ+LTSI+ Sbjct: 75 PQLLTSID 82>XP_006722486 Length = 1150 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 PQILTSIE 8 PQ+LTSI+ Sbjct: 75 PQLLTSID 82>XP_006722485 Length = 1168 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 PQILTSIE 8 PQ+LTSI+ Sbjct: 75 PQLLTSID 82>XP_005266720 Length = 1234 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 PQILTSIE 8 PQ+LTSI+ Sbjct: 75 PQLLTSID 82>XP_006722484 Length = 1252 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 PQILTSIE 8 PQ+LTSI+ Sbjct: 75 PQLLTSID 82>XP_005266717 Length = 1254 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 PQILTSIE 8 PQ+LTSI+ Sbjct: 75 PQLLTSID 82>XP_005266715 Length = 1272 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 PQILTSIE 8 PQ+LTSI+ Sbjct: 75 PQLLTSID 82>NP_116098 Length = 581 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 PQILTSIEL 9 PQI T +EL Sbjct: 96 PQIYTDLEL 104>XP_006718108 Length = 560 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 PQILTSIEL 9 PQI T +EL Sbjct: 96 PQIYTDLEL 104>NP_291025 Length = 963 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 PQILTSIE 8 PQ+ TSIE Sbjct: 936 PQVETSIE 943>NP_620162 Length = 316 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 PQILTSIE 8 P+I+TSI+ Sbjct: 81 PKIITSIQ 88>NP_001271330 Length = 337 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 PQILTSIE 8 P+I+TSI+ Sbjct: 81 PKIITSIQ 88>NP_653267 Length = 4753 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 PQILTSIEL 9 P +LT++EL Sbjct: 3687 PVLLTNVEL 3695>XP_005250103 Length = 758 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 PQILTS 6 PQILTS Sbjct: 328 PQILTS 333>XP_005264932 Length = 189 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 PQILTSIE 8 P+I+TSI+ Sbjct: 81 PKIITSIQ 88>XP_006713036 Length = 295 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 PQILTSIE 8 P+I+TSI+ Sbjct: 81 PKIITSIQ 88>XP_005264930 Length = 452 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 PQILTSIE 8 P+I+TSI+ Sbjct: 81 PKIITSIQ 88>NP_001185617 Length = 906 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 PQILTSI 7 P+ILTS+ Sbjct: 338 PKILTSV 344>NP_001003680 Length = 958 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 PQILTSI 7 P+ILTS+ Sbjct: 338 PKILTSV 344>NP_001185616 Length = 958 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 PQILTSI 7 P+ILTS+ Sbjct: 338 PKILTSV 344>NP_002294 Length = 1165 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 PQILTSI 7 P+ILTS+ Sbjct: 338 PKILTSV 344>NP_001003679 Length = 896 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 PQILTSI 7 P+ILTS+ Sbjct: 338 PKILTSV 344>NP_001185618 Length = 896 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 PQILTSI 7 P+ILTS+ Sbjct: 338 PKILTSV 344>NP_113678 Length = 852 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 PQILTSI 7 P ILTSI Sbjct: 184 PDILTSI 190Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.316 0.137 0.350 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 449,509 Number of extensions: 815 Number of successful extensions: 37 Number of sequences better than 10000.0: 35 Number of HSP's gapped: 37 Number of HSP's successfully gapped: 37 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.6 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |