Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000042 20 509 XP_006718908 20 509 XP_005271621 20 509 XP_006718907 20 509 XP_006718906 20 509 XP_005271619 20 509 XP_005271618 20 509 NP_004810 17 2528 XP_005259343 17 2528 NP_001182000 16 5631 NP_036396 16 5631 NP_001182001 16 5631 XP_005261571 16 5631 XP_005261570 16 5631 XP_005261569 16 5631 XP_006724290 16 5631 XP_005261568 16 5631 XP_005261567 16 5631 XP_005261566 16 5631 NP_001091089 16 7355 NP_057417 16 7355 XP_005255284 16 7355 XP_005255283 16 7355 XP_006720936 16 7355 XP_006720935 16 7355 XP_005255282 16 7355 XP_006715717 16 7355 XP_006715716 16 7355 NP_510868 16 7355 NP_714915 15 9605 NP_001135773 15 9605 NP_005920 15 9605 NP_201573 15 9605 XP_006716750 15 9605 XP_006716749 15 9605 XP_006716748 15 9605 XP_006713707 15 9605 XP_006713706 15 9605 XP_006713705 15 9605>NP_000042 Length = 3056 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 PMMALRTVI 9 P+MALRTVI Sbjct: 2222 PIMALRTVI 2230>XP_006718908 Length = 1708 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 PMMALRTVI 9 P+MALRTVI Sbjct: 874 PIMALRTVI 882>XP_005271621 Length = 2708 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 PMMALRTVI 9 P+MALRTVI Sbjct: 1874 PIMALRTVI 1882>XP_006718907 Length = 3050 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 PMMALRTVI 9 P+MALRTVI Sbjct: 2216 PIMALRTVI 2224>XP_006718906 Length = 3056 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 PMMALRTVI 9 P+MALRTVI Sbjct: 2222 PIMALRTVI 2230>XP_005271619 Length = 3056 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 PMMALRTVI 9 P+MALRTVI Sbjct: 2222 PIMALRTVI 2230>XP_005271618 Length = 3056 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 PMMALRTVI 9 P+MALRTVI Sbjct: 2222 PIMALRTVI 2230>NP_004810 Length = 1274 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 PMMALRTVI 9 PM+ +RTVI Sbjct: 995 PMLLMRTVI 1003>XP_005259343 Length = 1274 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 PMMALRTVI 9 PM+ +RTVI Sbjct: 995 PMLLMRTVI 1003>NP_001182000 Length = 407 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 PMMALRTVI 9 P+MA+ TV+ Sbjct: 185 PLMAVSTVV 193>NP_036396 Length = 407 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 PMMALRTVI 9 P+MA+ TV+ Sbjct: 185 PLMAVSTVV 193>NP_001182001 Length = 341 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 PMMALRTVI 9 P+MA+ TV+ Sbjct: 119 PLMAVSTVV 127>XP_005261571 Length = 348 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 PMMALRTVI 9 P+MA+ TV+ Sbjct: 119 PLMAVSTVV 127>XP_005261570 Length = 348 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 PMMALRTVI 9 P+MA+ TV+ Sbjct: 119 PLMAVSTVV 127>XP_005261569 Length = 365 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 PMMALRTVI 9 P+MA+ TV+ Sbjct: 218 PLMAVSTVV 226>XP_006724290 Length = 414 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 PMMALRTVI 9 P+MA+ TV+ Sbjct: 185 PLMAVSTVV 193>XP_005261568 Length = 414 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 PMMALRTVI 9 P+MA+ TV+ Sbjct: 185 PLMAVSTVV 193>XP_005261567 Length = 440 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 PMMALRTVI 9 P+MA+ TV+ Sbjct: 218 PLMAVSTVV 226>XP_005261566 Length = 447 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 PMMALRTVI 9 P+MA+ TV+ Sbjct: 218 PLMAVSTVV 226>NP_001091089 Length = 413 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 PMMALRTVI 9 P+MA+ T+I Sbjct: 194 PVMAVTTII 202>NP_057417 Length = 2752 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 PMMALRT 7 P+M+LRT Sbjct: 2216 PLMSLRT 2222>XP_005255284 Length = 2581 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 PMMALRT 7 P+M+LRT Sbjct: 2216 PLMSLRT 2222>XP_005255283 Length = 2751 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 PMMALRT 7 P+M+LRT Sbjct: 2216 PLMSLRT 2222>XP_006720936 Length = 2751 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 PMMALRT 7 P+M+LRT Sbjct: 2215 PLMSLRT 2221>XP_006720935 Length = 2752 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 PMMALRT 7 P+M+LRT Sbjct: 2216 PLMSLRT 2222>XP_005255282 Length = 2752 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 PMMALRT 7 P+M+LRT Sbjct: 2216 PLMSLRT 2222>XP_006715717 Length = 441 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 PMMALRTVI 9 P+MA+ T+I Sbjct: 194 PVMAVTTII 202>XP_006715716 Length = 441 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 PMMALRTVI 9 P+MA+ T+I Sbjct: 194 PVMAVTTII 202>NP_510868 Length = 314 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 PMMALRTVI 9 PM LRTV+ Sbjct: 286 PMTPLRTVM 294>NP_714915 Length = 995 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 PMMALRTVI 9 PM+ L+TV+ Sbjct: 553 PMIDLQTVV 561>NP_001135773 Length = 914 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 PMMALRTVI 9 PM+ L+TV+ Sbjct: 472 PMIDLQTVV 480>NP_005920 Length = 738 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 MMALRTVI 9 ++ALRTV+ Sbjct: 11 LLALRTVL 18>NP_201573 Length = 302 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 MMALRTVI 9 ++ALRTV+ Sbjct: 11 LLALRTVL 18>XP_006716750 Length = 795 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 PMMALRTVI 9 PM+ L+TV+ Sbjct: 353 PMIDLQTVV 361>XP_006716749 Length = 894 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 PMMALRTVI 9 PM+ L+TV+ Sbjct: 452 PMIDLQTVV 460>XP_006716748 Length = 980 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 PMMALRTVI 9 PM+ L+TV+ Sbjct: 538 PMIDLQTVV 546>XP_006713707 Length = 746 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 MMALRTVI 9 ++ALRTV+ Sbjct: 11 LLALRTVL 18>XP_006713706 Length = 759 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 MMALRTVI 9 ++ALRTV+ Sbjct: 11 LLALRTVL 18>XP_006713705 Length = 760 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 MMALRTVI 9 ++ALRTV+ Sbjct: 11 LLALRTVL 18Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.342 0.141 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 272,543 Number of extensions: 338 Number of successful extensions: 39 Number of sequences better than 10000.0: 39 Number of HSP's gapped: 39 Number of HSP's successfully gapped: 39 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.7 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |