Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_004351 18 1135 NP_001153059 18 1482 NP_001153060 18 1482 NP_598000 18 1482 XP_005248716 18 1482 NP_057440 17 3301 NP_001182539 17 3301 NP_064581 17 3301 NP_036587 17 4312 NP_919267 17 4312 XP_006712457 17 4312 XP_006712456 17 4312 XP_006712455 17 4312 XP_005263691 17 4312 NP_065970 16 5631 NP_036560 16 5631 NP_001154836 16 5631 NP_001154835 16 5631 NP_059429 16 5631 XP_005254361 16 5631 XP_006712718 16 5631 XP_005246767 16 5631 XP_005246766 16 5631 XP_006712717 16 5631 NP_001239155 16 7355 NP_006613 16 7355 NP_997320 16 7355 NP_062826 16 7355 NP_996801 16 7355 XP_006720106 16 7355 XP_005253612 16 7355 NP_001074299 15 9605 NP_001013764 15 9605 NP_001265667 15 9605 NP_057677 15 9605 NP_001265668 15 9605 NP_001094385 15 9605 XP_005255865 15 9605 XP_006721206 15 9605 XP_005249228 15 9605>NP_004351 Length = 882 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 PMEILNTVT 9 PMEIL TVT Sbjct: 245 PMEILITVT 253>NP_001153059 Length = 1428 Score = 18.1 bits (35), Expect = 1482 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 PMEILNTVT 9 P+EIL TVT Sbjct: 320 PVEILTTVT 328>NP_001153060 Length = 1368 Score = 18.1 bits (35), Expect = 1482 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 PMEILNTVT 9 P+EIL TVT Sbjct: 243 PVEILTTVT 251>NP_598000 Length = 1445 Score = 18.1 bits (35), Expect = 1482 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 PMEILNTVT 9 P+EIL TVT Sbjct: 320 PVEILTTVT 328>XP_005248716 Length = 1445 Score = 18.1 bits (35), Expect = 1482 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 PMEILNTVT 9 P+EIL TVT Sbjct: 320 PVEILTTVT 328>NP_057440 Length = 476 Score = 16.9 bits (32), Expect = 3301 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 PMEILNT 7 PME++NT Sbjct: 109 PMEVVNT 115>NP_001182539 Length = 476 Score = 16.9 bits (32), Expect = 3301 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 PMEILNT 7 PME++NT Sbjct: 109 PMEVVNT 115>NP_064581 Length = 855 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 PMEILNTVT 9 P EI+NT T Sbjct: 371 PREIINTYT 379>NP_036587 Length = 1056 Score = 16.5 bits (31), Expect = 4312 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 PMEILN 6 PMEILN Sbjct: 13 PMEILN 18>NP_919267 Length = 240 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 PMEILNT 7 PME LNT Sbjct: 62 PMEALNT 68>XP_006712457 Length = 964 Score = 16.5 bits (31), Expect = 4312 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 PMEILN 6 PMEILN Sbjct: 13 PMEILN 18>XP_006712456 Length = 965 Score = 16.5 bits (31), Expect = 4312 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 PMEILN 6 PMEILN Sbjct: 13 PMEILN 18>XP_006712455 Length = 1055 Score = 16.5 bits (31), Expect = 4312 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 PMEILN 6 PMEILN Sbjct: 13 PMEILN 18>XP_005263691 Length = 1056 Score = 16.5 bits (31), Expect = 4312 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 PMEILN 6 PMEILN Sbjct: 13 PMEILN 18>NP_065970 Length = 1657 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 MEILNTV 8 MEILNT+ Sbjct: 830 MEILNTL 836>NP_036560 Length = 398 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 PMEILNT 7 PM+I+NT Sbjct: 279 PMDIVNT 285>NP_001154836 Length = 278 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 PMEILNT 7 PM+I+NT Sbjct: 163 PMDIVNT 169>NP_001154835 Length = 394 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 PMEILNT 7 PM+I+NT Sbjct: 279 PMDIVNT 285>NP_059429 Length = 282 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 PMEILNT 7 PM+I+NT Sbjct: 163 PMDIVNT 169>XP_005254361 Length = 376 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 PMEILNT 7 PM+I+NT Sbjct: 279 PMDIVNT 285>XP_006712718 Length = 969 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 MEILNTV 8 MEILNT+ Sbjct: 142 MEILNTL 148>XP_005246767 Length = 1356 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 MEILNTV 8 MEILNT+ Sbjct: 830 MEILNTL 836>XP_005246766 Length = 1656 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 MEILNTV 8 MEILNT+ Sbjct: 830 MEILNTL 836>XP_006712717 Length = 1657 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 MEILNTV 8 MEILNT+ Sbjct: 830 MEILNTL 836>NP_001239155 Length = 671 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 MEILNTVT 9 ME+L T+T Sbjct: 1 MELLRTIT 8>NP_006613 Length = 685 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 MEILNTVT 9 ME+L T+T Sbjct: 1 MELLRTIT 8>NP_997320 Length = 4471 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 MEILNT 7 MEILNT Sbjct: 4057 MEILNT 4062>NP_062826 Length = 580 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 MEILNTVT 9 +E+LNT T Sbjct: 247 LELLNTTT 254>NP_996801 Length = 323 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 MEILNTV 8 ME+LNT+ Sbjct: 185 MEVLNTL 191>XP_006720106 Length = 287 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 MEILNTV 8 ME+LNT+ Sbjct: 149 MEVLNTL 155>XP_005253612 Length = 4589 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 MEILNT 7 MEILNT Sbjct: 4175 MEILNT 4180>NP_001074299 Length = 483 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 MEILNTV 8 +E+LNTV Sbjct: 194 IEVLNTV 200>NP_001013764 Length = 1271 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 PMEILNTV 8 P++ILN V Sbjct: 598 PLDILNRV 605>NP_001265667 Length = 449 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 PMEILNTV 8 P+EILN + Sbjct: 331 PVEILNYI 338>NP_057677 Length = 469 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 PMEILNTV 8 P+EILN + Sbjct: 351 PVEILNYI 358>NP_001265668 Length = 297 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 PMEILNTV 8 P+EILN + Sbjct: 179 PVEILNYI 186>NP_001094385 Length = 926 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PMEILNTVT 9 PM++LN T Sbjct: 378 PMDVLNEWT 386>XP_005255865 Length = 917 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PMEILNTVT 9 PM++LN T Sbjct: 378 PMDVLNEWT 386>XP_006721206 Length = 921 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PMEILNTVT 9 PM++LN T Sbjct: 373 PMDVLNEWT 381>XP_005249228 Length = 420 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 PMEILNTV 8 P+EILN + Sbjct: 351 PVEILNYI 358Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.315 0.130 0.351 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 468,008 Number of extensions: 649 Number of successful extensions: 40 Number of sequences better than 10000.0: 40 Number of HSP's gapped: 40 Number of HSP's successfully gapped: 40 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |