Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000537 20 509 NP_001119584 20 509 NP_001119586 20 509 NP_001119585 20 509 NP_002244 17 4312 NP_775100 16 5631 NP_060890 16 5631 NP_937793 16 5631 XP_005271961 16 5631 XP_006710817 16 5631 XP_005271062 16 5631 XP_006710816 16 5631 NP_997010 16 5631 NP_055178 16 7355 NP_001264984 16 7355 NP_115871 16 7355 XP_006722986 16 7355 XP_005259717 16 7355 XP_005259716 16 7355 XP_005266395 16 7355 NP_612459 15 9605 NP_001264993 15 9605 NP_056483 15 9605 NP_055832 15 9605 NP_439896 15 9605 NP_203133 15 9605 NP_963920 15 9605 NP_963918 15 9605 NP_001273621 15 9605 XP_006723827 15 9605 XP_005260415 15 9605 XP_005266310 15 9605 XP_005250917 15 9605 XP_006716604 15 9605 XP_005250916 15 9605 XP_005250915 15 9605 XP_005250914 15 9605 XP_005250913 15 9605 XP_006715391 15 9605 XP_005270706 15 9605 XP_005270705 15 9605 NP_001001711 15 9605>NP_000537 Length = 393 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 PLSLETFSD 9 PLS ETFSD Sbjct: 13 PLSQETFSD 21>NP_001119584 Length = 393 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 PLSLETFSD 9 PLS ETFSD Sbjct: 13 PLSQETFSD 21>NP_001119586 Length = 341 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 PLSLETFSD 9 PLS ETFSD Sbjct: 13 PLSQETFSD 21>NP_001119585 Length = 346 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 PLSLETFSD 9 PLS ETFSD Sbjct: 13 PLSQETFSD 21>NP_002244 Length = 1356 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 PLSLETFSD 9 P+S++TF D Sbjct: 1233 PVSVKTFED 1241>NP_775100 Length = 374 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 PLSLETFS 8 P SLET+S Sbjct: 39 PWSLETYS 46>NP_060890 Length = 547 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LETFSD 9 LETFSD Sbjct: 490 LETFSD 495>NP_937793 Length = 536 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 PLSLETFSD 9 PLS ETF + Sbjct: 383 PLSSETFKN 391>XP_005271961 Length = 377 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 PLSLETFSD 9 PLS ETF + Sbjct: 224 PLSSETFKN 232>XP_006710817 Length = 315 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LETFSD 9 LETFSD Sbjct: 258 LETFSD 263>XP_005271062 Length = 316 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LETFSD 9 LETFSD Sbjct: 259 LETFSD 264>XP_006710816 Length = 476 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LETFSD 9 LETFSD Sbjct: 419 LETFSD 424>NP_997010 Length = 325 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 PLSLETFS 8 PL L TFS Sbjct: 288 PLGLSTFS 295>NP_055178 Length = 4579 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 PLSLET 6 PLSLET Sbjct: 2872 PLSLET 2877>NP_001264984 Length = 4432 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 PLSLET 6 PLSLET Sbjct: 2725 PLSLET 2730>NP_115871 Length = 1537 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LSLETFSD 9 LSL +FSD Sbjct: 1326 LSLHSFSD 1333>XP_006722986 Length = 1519 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LSLETFSD 9 LSL +FSD Sbjct: 1107 LSLHSFSD 1114>XP_005259717 Length = 1738 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LSLETFSD 9 LSL +FSD Sbjct: 1326 LSLHSFSD 1333>XP_005259716 Length = 1738 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LSLETFSD 9 LSL +FSD Sbjct: 1326 LSLHSFSD 1333>XP_005266395 Length = 4588 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 PLSLET 6 PLSLET Sbjct: 2881 PLSLET 2886>NP_612459 Length = 196 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 LSLETFSD 9 LSLE F D Sbjct: 139 LSLERFQD 146>NP_001264993 Length = 1194 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 PLSLETFSD 9 PL L TF + Sbjct: 1079 PLQLSTFGE 1087>NP_056483 Length = 1264 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LSLETFSD 9 LSL TFS+ Sbjct: 36 LSLPTFSE 43>NP_055832 Length = 942 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LSLETFSD 9 ++LETF D Sbjct: 497 VTLETFQD 504>NP_439896 Length = 456 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 SLETFS 8 SLETFS Sbjct: 169 SLETFS 174>NP_203133 Length = 307 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LSLETFSD 9 L++ETFS+ Sbjct: 251 LAVETFSE 258>NP_963920 Length = 828 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LSLETFSD 9 ++LETF D Sbjct: 497 VTLETFQD 504>NP_963918 Length = 911 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LSLETFSD 9 ++LETF D Sbjct: 466 VTLETFQD 473>NP_001273621 Length = 1252 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LSLETFSD 9 LSL TFS+ Sbjct: 36 LSLPTFSE 43>XP_006723827 Length = 1208 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 PLSLETFS 8 PLS TFS Sbjct: 18 PLSSRTFS 25>XP_005260415 Length = 1233 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 PLSLETFS 8 PLS TFS Sbjct: 18 PLSSRTFS 25>XP_005266310 Length = 196 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 LSLETFSD 9 LSLE F D Sbjct: 139 LSLERFQD 146>XP_005250917 Length = 824 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LSLETFSD 9 LSL TFS+ Sbjct: 36 LSLPTFSE 43>XP_006716604 Length = 1045 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LSLETFSD 9 LSL TFS+ Sbjct: 36 LSLPTFSE 43>XP_005250916 Length = 1099 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LSLETFSD 9 LSL TFS+ Sbjct: 36 LSLPTFSE 43>XP_005250915 Length = 1210 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LSLETFSD 9 LSL TFS+ Sbjct: 36 LSLPTFSE 43>XP_005250914 Length = 1211 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LSLETFSD 9 LSL TFS+ Sbjct: 36 LSLPTFSE 43>XP_005250913 Length = 1211 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LSLETFSD 9 LSL TFS+ Sbjct: 36 LSLPTFSE 43>XP_006715391 Length = 431 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 SLETFS 8 SLETFS Sbjct: 169 SLETFS 174>XP_005270706 Length = 851 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LSLETFSD 9 ++LETF D Sbjct: 497 VTLETFQD 504>XP_005270705 Length = 934 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LSLETFSD 9 ++LETF D Sbjct: 497 VTLETFQD 504>NP_001001711 Length = 396 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 SLETFS 8 SLETFS Sbjct: 175 SLETFS 180Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.310 0.130 0.357 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 529,176 Number of extensions: 1315 Number of successful extensions: 42 Number of sequences better than 10000.0: 42 Number of HSP's gapped: 42 Number of HSP's successfully gapped: 42 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |