Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000258 19 869 NP_001035957 19 869 XP_006721991 19 869 XP_006721990 19 869 XP_006721989 19 869 XP_005258041 19 869 XP_006721988 19 869 XP_006721987 19 869 XP_006721986 19 869 XP_005258040 19 869 XP_006721985 19 869 NP_000024 16 5631 NP_001136095 16 7355 NP_001136094 16 7355 NP_115873 16 7355 NP_078934 15 9605 NP_665736 15 9605 NP_005255 15 9605 NP_001138925 15 9605 NP_653274 15 9605 NP_001008270 15 9605 NP_002579 15 9605 NP_115778 15 9605 XP_005269753 15 9605 NP_005155 15 9605>NP_000258 Length = 2818 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 PLLQIVITS 9 PLL+IVITS Sbjct: 1303 PLLRIVITS 1311>NP_001035957 Length = 2839 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 PLLQIVITS 9 PLL+IVITS Sbjct: 1303 PLLRIVITS 1311>XP_006721991 Length = 1632 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 PLLQIVITS 9 PLL+IVITS Sbjct: 1313 PLLRIVITS 1321>XP_006721990 Length = 2823 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 PLLQIVITS 9 PLL+IVITS Sbjct: 1313 PLLRIVITS 1321>XP_006721989 Length = 2823 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 PLLQIVITS 9 PLL+IVITS Sbjct: 1313 PLLRIVITS 1321>XP_005258041 Length = 2836 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 PLLQIVITS 9 PLL+IVITS Sbjct: 1303 PLLRIVITS 1311>XP_006721988 Length = 2846 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 PLLQIVITS 9 PLL+IVITS Sbjct: 1313 PLLRIVITS 1321>XP_006721987 Length = 2849 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 PLLQIVITS 9 PLL+IVITS Sbjct: 1313 PLLRIVITS 1321>XP_006721986 Length = 2854 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 PLLQIVITS 9 PLL+IVITS Sbjct: 1300 PLLRIVITS 1308>XP_005258040 Length = 2857 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 PLLQIVITS 9 PLL+IVITS Sbjct: 1303 PLLRIVITS 1311>XP_006721985 Length = 2867 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 PLLQIVITS 9 PLL+IVITS Sbjct: 1313 PLLRIVITS 1321>NP_000024 Length = 745 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PLLQIVITS 9 PLL + +TS Sbjct: 218 PLLDVAVTS 226>NP_001136095 Length = 474 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 PLLQIVIT 8 P LQ+V+T Sbjct: 257 PKLQVVVT 264>NP_001136094 Length = 491 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 PLLQIVIT 8 P LQ+V+T Sbjct: 218 PKLQVVVT 225>NP_115873 Length = 530 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 PLLQIVIT 8 P LQ+V+T Sbjct: 257 PKLQVVVT 264>NP_078934 Length = 1081 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 PLLQIV 6 PLLQIV Sbjct: 394 PLLQIV 399>NP_665736 Length = 460 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 PLLQIVITS 9 PLL +V+T+ Sbjct: 441 PLLVLVVTA 449>NP_005255 Length = 465 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 PLLQIVITS 9 PLL +V+T+ Sbjct: 446 PLLVLVVTA 454>NP_001138925 Length = 460 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 PLLQIVITS 9 PLL +V+T+ Sbjct: 441 PLLVLVVTA 449>NP_653274 Length = 248 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 PLLQIVIT 8 P+L+++IT Sbjct: 112 PILRLIIT 119>NP_001008270 Length = 159 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 PLLQIVITS 9 PLL +++TS Sbjct: 9 PLLLLLVTS 17>NP_002579 Length = 934 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 PLLQIVITS 9 P LQ+V+T+ Sbjct: 208 PSLQLVLTA 216>NP_115778 Length = 863 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 PLLQIVITS 9 P LQ+V+T+ Sbjct: 208 PSLQLVLTA 216>XP_005269753 Length = 465 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 PLLQIVITS 9 PLL +V+T+ Sbjct: 446 PLLVLVVTA 454>NP_005155 Length = 740 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 PLLQIVITS 9 P+L +++TS Sbjct: 231 PILDVMLTS 239Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.327 0.144 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 371,129 Number of extensions: 600 Number of successful extensions: 25 Number of sequences better than 10000.0: 25 Number of HSP's gapped: 25 Number of HSP's successfully gapped: 25 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.0 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |