Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000258 19 665 NP_001035957 19 665 XP_006721990 19 665 XP_006721989 19 665 XP_005258041 19 665 XP_006721988 19 665 XP_006721987 19 665 XP_006721986 19 665 XP_005258040 19 665 XP_006721985 19 665 NP_055859 19 869 NP_001072 17 2528 NP_001269421 17 3301 NP_003963 17 3301 XP_005270323 17 3301 XP_005270322 17 3301 NP_001129335 16 7355 XP_006719123 16 7355 NP_001129336 16 7355 NP_776163 16 7355 NP_001129575 15 9605 NP_597705 15 9605 NP_612385 15 9605 NP_001668 15 9605 NP_001004485 15 9605>NP_000258 Length = 2818 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 PKIQVLLLT 9 PKIQ LLLT Sbjct: 2592 PKIQALLLT 2600>NP_001035957 Length = 2839 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 PKIQVLLLT 9 PKIQ LLLT Sbjct: 2613 PKIQALLLT 2621>XP_006721990 Length = 2823 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 PKIQVLLLT 9 PKIQ LLLT Sbjct: 2623 PKIQALLLT 2631>XP_006721989 Length = 2823 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 PKIQVLLLT 9 PKIQ LLLT Sbjct: 2623 PKIQALLLT 2631>XP_005258041 Length = 2836 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 PKIQVLLLT 9 PKIQ LLLT Sbjct: 2592 PKIQALLLT 2600>XP_006721988 Length = 2846 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 PKIQVLLLT 9 PKIQ LLLT Sbjct: 2602 PKIQALLLT 2610>XP_006721987 Length = 2849 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 PKIQVLLLT 9 PKIQ LLLT Sbjct: 2623 PKIQALLLT 2631>XP_006721986 Length = 2854 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 PKIQVLLLT 9 PKIQ LLLT Sbjct: 2610 PKIQALLLT 2618>XP_005258040 Length = 2857 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 PKIQVLLLT 9 PKIQ LLLT Sbjct: 2613 PKIQALLLT 2621>XP_006721985 Length = 2867 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 PKIQVLLLT 9 PKIQ LLLT Sbjct: 2623 PKIQALLLT 2631>NP_055859 Length = 613 Score = 18.9 bits (37), Expect = 869 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 PKIQVLLLT 9 P++QVLLLT Sbjct: 512 PEVQVLLLT 520>NP_001072 Length = 3623 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 KIQVLLLT 9 K+QVLLLT Sbjct: 1365 KLQVLLLT 1372>NP_001269421 Length = 230 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 PKIQVLLL 8 PKI++LLL Sbjct: 115 PKIKILLL 122>NP_003963 Length = 1849 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 PKIQVLLLT 9 P I VLLLT Sbjct: 1697 PSIDVLLLT 1705>XP_005270323 Length = 1519 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 PKIQVLLLT 9 P I VLLLT Sbjct: 1367 PSIDVLLLT 1375>XP_005270322 Length = 1646 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 PKIQVLLLT 9 P I VLLLT Sbjct: 1494 PSIDVLLLT 1502>NP_001129335 Length = 262 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 PKIQVLLLT 9 P+IQ+ LLT Sbjct: 65 PEIQLRLLT 73>XP_006719123 Length = 262 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 PKIQVLLLT 9 P+IQ+ LLT Sbjct: 65 PEIQLRLLT 73>NP_001129336 Length = 262 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 PKIQVLLLT 9 P+IQ+ LLT Sbjct: 65 PEIQLRLLT 73>NP_776163 Length = 262 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 PKIQVLLLT 9 P+IQ+ LLT Sbjct: 65 PEIQLRLLT 73>NP_001129575 Length = 1108 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 PKIQVL 6 PK+QVL Sbjct: 145 PKVQVL 150>NP_597705 Length = 1099 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 PKIQVL 6 PK+QVL Sbjct: 143 PKVQVL 148>NP_612385 Length = 440 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 KIQVLLLT 9 K QVL+LT Sbjct: 67 KAQVLMLT 74>NP_001668 Length = 303 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 IQVLLLT 9 IQV+LLT Sbjct: 54 IQVMLLT 60>NP_001004485 Length = 319 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 PKIQVLL 7 PK+QV++ Sbjct: 21 PKVQVII 27Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.328 0.148 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 410,143 Number of extensions: 612 Number of successful extensions: 25 Number of sequences better than 10000.0: 25 Number of HSP's gapped: 25 Number of HSP's successfully gapped: 25 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.0 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |