Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_722576 20 390 XP_005262424 20 390 NP_001273331 17 2528 NP_000237 17 2528 XP_006720946 17 2528 XP_005255380 17 2528 XP_006720945 17 2528 XP_006720944 17 2528 XP_005255378 17 2528 XP_005255377 17 2528 XP_006720943 17 2528 NP_078966 16 5631 NP_055426 16 5631 XP_006723004 16 5631 XP_006715629 16 5631 XP_006715468 16 5631 XP_005248756 16 5631 XP_006715467 16 5631 NP_078970 16 5631 NP_149072 16 7355 NP_056163 16 7355 NP_001180298 16 7355 NP_001180240 16 7355 XP_003960836 16 7355 XP_006726566 16 7355 XP_003846345 16 7355 XP_006717411 16 7355 XP_006715838 16 7355 XP_005263969 16 7355 XP_005263968 16 7355 XP_005263967 16 7355 XP_005263966 16 7355 XP_006710955 16 7355 XP_003846677 16 7355 XP_006710279 16 7355 NP_001180241 16 7355 NP_079004 16 7355 NP_001180242 16 7355 XP_006726844 15 9605 XP_006723587 15 9605 XP_006710121 15 9605>NP_722576 Length = 3080 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 PFLGTRMTS 9 P LGTRMTS Sbjct: 1864 PVLGTRMTS 1872>XP_005262424 Length = 2875 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 PFLGTRMTS 9 P LGTRMTS Sbjct: 1659 PVLGTRMTS 1667>NP_001273331 Length = 1131 Score = 17.3 bits (33), Expect = 2528 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 FLGTRMT 8 FLGTR+T Sbjct: 836 FLGTRLT 842>NP_000237 Length = 1130 Score = 17.3 bits (33), Expect = 2528 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 FLGTRMT 8 FLGTR+T Sbjct: 835 FLGTRLT 841>XP_006720946 Length = 1081 Score = 17.3 bits (33), Expect = 2528 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 FLGTRMT 8 FLGTR+T Sbjct: 786 FLGTRLT 792>XP_005255380 Length = 1082 Score = 17.3 bits (33), Expect = 2528 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 FLGTRMT 8 FLGTR+T Sbjct: 787 FLGTRLT 793>XP_006720945 Length = 1096 Score = 17.3 bits (33), Expect = 2528 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 FLGTRMT 8 FLGTR+T Sbjct: 801 FLGTRLT 807>XP_006720944 Length = 1097 Score = 17.3 bits (33), Expect = 2528 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 FLGTRMT 8 FLGTR+T Sbjct: 802 FLGTRLT 808>XP_005255378 Length = 1145 Score = 17.3 bits (33), Expect = 2528 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 FLGTRMT 8 FLGTR+T Sbjct: 850 FLGTRLT 856>XP_005255377 Length = 1146 Score = 17.3 bits (33), Expect = 2528 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 FLGTRMT 8 FLGTR+T Sbjct: 851 FLGTRLT 857>XP_006720943 Length = 1208 Score = 17.3 bits (33), Expect = 2528 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 FLGTRMT 8 FLGTR+T Sbjct: 913 FLGTRLT 919>NP_078966 Length = 14507 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 PFLGTRMT 8 P L TRMT Sbjct: 10395 PILDTRMT 10402>NP_055426 Length = 5596 Score = 16.2 bits (30), Expect = 5631 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 PFLGTRM 7 P++GTR+ Sbjct: 2004 PYMGTRL 2010>XP_006723004 Length = 6443 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 PFLGTRMT 8 P L TRMT Sbjct: 2309 PILDTRMT 2316>XP_006715629 Length = 1667 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 PFLGTRMT 8 PFL RMT Sbjct: 511 PFLNYRMT 518>XP_006715468 Length = 3744 Score = 16.2 bits (30), Expect = 5631 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 PFLGTRM 7 P++GTR+ Sbjct: 152 PYMGTRL 158>XP_005248756 Length = 3905 Score = 16.2 bits (30), Expect = 5631 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 PFLGTRM 7 P++GTR+ Sbjct: 313 PYMGTRL 319>XP_006715467 Length = 5550 Score = 16.2 bits (30), Expect = 5631 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 PFLGTRM 7 P++GTR+ Sbjct: 2004 PYMGTRL 2010>NP_078970 Length = 1667 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 PFLGTRMT 8 PFL RMT Sbjct: 511 PFLNYRMT 518>NP_149072 Length = 2240 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 PFLGTR 6 PFLG+R Sbjct: 1877 PFLGSR 1882>NP_056163 Length = 1883 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 PFLGTRM 7 PFLG R+ Sbjct: 214 PFLGARV 220>NP_001180298 Length = 2240 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 PFLGTR 6 PFLG+R Sbjct: 1877 PFLGSR 1882>NP_001180240 Length = 471 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 PFLGTRMT 8 PF+GT T Sbjct: 94 PFVGTEST 101>XP_003960836 Length = 219 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 PFLGTR 6 PFLGT+ Sbjct: 112 PFLGTQ 117>XP_006726566 Length = 963 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 PFLGTRMTS 9 P L T MTS Sbjct: 500 PLLSTSMTS 508>XP_003846345 Length = 219 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 PFLGTR 6 PFLGT+ Sbjct: 112 PFLGTQ 117>XP_006717411 Length = 963 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 PFLGTRMTS 9 P L T MTS Sbjct: 500 PLLSTSMTS 508>XP_006715838 Length = 471 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 PFLGTRMT 8 PF+GT T Sbjct: 94 PFVGTEST 101>XP_005263969 Length = 1844 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 PFLGTRM 7 PFLG R+ Sbjct: 175 PFLGARV 181>XP_005263968 Length = 1861 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 PFLGTRM 7 PFLG R+ Sbjct: 192 PFLGARV 198>XP_005263967 Length = 1899 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 PFLGTRM 7 PFLG R+ Sbjct: 231 PFLGARV 237>XP_005263966 Length = 1900 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 PFLGTRM 7 PFLG R+ Sbjct: 231 PFLGARV 237>XP_006710955 Length = 241 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 PFLGTRM 7 PF GTR+ Sbjct: 185 PFQGTRL 191>XP_003846677 Length = 219 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 PFLGTR 6 PFLGT+ Sbjct: 112 PFLGTQ 117>XP_006710279 Length = 963 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 PFLGTRMTS 9 P L T MTS Sbjct: 500 PLLSTSMTS 508>NP_001180241 Length = 397 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 PFLGTRMT 8 PF+GT T Sbjct: 94 PFVGTEST 101>NP_079004 Length = 434 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 PFLGTRMT 8 PF+GT T Sbjct: 94 PFVGTEST 101>NP_001180242 Length = 445 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 PFLGTRMT 8 PF+GT T Sbjct: 94 PFVGTEST 101>XP_006726844 Length = 225 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PFLGTRMTS 9 PF G R+T+ Sbjct: 157 PFAGWRITA 165>XP_006723587 Length = 225 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PFLGTRMTS 9 PF G R+T+ Sbjct: 157 PFAGWRITA 165>XP_006710121 Length = 225 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PFLGTRMTS 9 PF G R+T+ Sbjct: 157 PFAGWRITA 165Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.326 0.137 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 416,262 Number of extensions: 677 Number of successful extensions: 41 Number of sequences better than 10000.0: 41 Number of HSP's gapped: 41 Number of HSP's successfully gapped: 41 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.1 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |