Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001135920 17 2528 NP_001135921 17 2528 XP_006721159 17 2528 XP_005255675 17 2528 NP_001135923 17 2528 NP_114427 17 2528 NP_001135922 17 2528 NP_071351 17 3301 XP_006720647 17 4312 NP_001001954 17 4312 NP_003483 16 5631 NP_001159764 16 5631 NP_003729 16 5631 NP_001136336 16 5631 XP_006721417 16 5631 XP_006721416 16 5631 NP_001278086 16 7355 NP_001181876 16 7355 NP_937887 16 7355 NP_937884 16 7355 NP_004944 16 7355 NP_001181875 16 7355 NP_937885 16 7355 NP_886553 16 7355 NP_065799 16 7355 NP_060198 16 7355 XP_005257594 16 7355 XP_006722050 16 7355 XP_005257538 16 7355 XP_006722026 16 7355 XP_005268803 15 9605 XP_005268802 15 9605 XP_005268801 15 9605 XP_005268800 15 9605 XP_005268799 15 9605 XP_006716155 15 9605 NP_075051 15 9605 NP_056090 15 9605>NP_001135920 Length = 528 Score = 17.3 bits (33), Expect = 2528 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 PFLFMSL 7 PFLF+SL Sbjct: 368 PFLFLSL 374>NP_001135921 Length = 454 Score = 17.3 bits (33), Expect = 2528 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 PFLFMSL 7 PFLF+SL Sbjct: 294 PFLFLSL 300>XP_006721159 Length = 521 Score = 17.3 bits (33), Expect = 2528 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 PFLFMSL 7 PFLF+SL Sbjct: 361 PFLFLSL 367>XP_005255675 Length = 573 Score = 17.3 bits (33), Expect = 2528 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 PFLFMSL 7 PFLF+SL Sbjct: 413 PFLFLSL 419>NP_001135923 Length = 476 Score = 17.3 bits (33), Expect = 2528 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 PFLFMSL 7 PFLF+SL Sbjct: 316 PFLFLSL 322>NP_114427 Length = 528 Score = 17.3 bits (33), Expect = 2528 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 PFLFMSL 7 PFLF+SL Sbjct: 368 PFLFLSL 374>NP_001135922 Length = 455 Score = 17.3 bits (33), Expect = 2528 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 PFLFMSL 7 PFLF+SL Sbjct: 295 PFLFLSL 301>NP_071351 Length = 2752 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 PFLFMSLQK 9 P LFMSL K Sbjct: 2419 PLLFMSLIK 2427>XP_006720647 Length = 219 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PFLFMSLQK 9 PF F+ +QK Sbjct: 58 PFWFLEIQK 66>NP_001001954 Length = 324 Score = 16.5 bits (31), Expect = 4312 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 PFLFMSL 7 PF+FM+L Sbjct: 317 PFIFMTL 323>NP_003483 Length = 261 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 PFLFMSLQ 8 P+LF+SL+ Sbjct: 139 PWLFLSLE 146>NP_001159764 Length = 1146 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 PFLFMSLQK 9 PFL LQK Sbjct: 911 PFLLRGLQK 919>NP_003729 Length = 1203 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 PFLFMSLQK 9 PFL LQK Sbjct: 911 PFLLRGLQK 919>NP_001136336 Length = 2521 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 PFLFMSL 7 P LFMSL Sbjct: 2190 PLLFMSL 2196>XP_006721417 Length = 2497 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 PFLFMSL 7 P LFMSL Sbjct: 2166 PLLFMSL 2172>XP_006721416 Length = 2504 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 PFLFMSL 7 P LFMSL Sbjct: 2173 PLLFMSL 2179>NP_001278086 Length = 1559 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 FLFMSLQK 9 F+F S+QK Sbjct: 582 FIFASMQK 589>NP_001181876 Length = 1606 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 FLFMSLQK 9 F+F S+QK Sbjct: 629 FIFASMQK 636>NP_937887 Length = 1512 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 FLFMSLQK 9 F+F S+QK Sbjct: 535 FIFASMQK 542>NP_937884 Length = 1599 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 FLFMSLQK 9 F+F S+QK Sbjct: 622 FIFASMQK 629>NP_004944 Length = 1404 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 FLFMSLQK 9 F+F S+QK Sbjct: 426 FIFASMQK 433>NP_001181875 Length = 1606 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 FLFMSLQK 9 F+F S+QK Sbjct: 629 FIFASMQK 636>NP_937885 Length = 1435 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 FLFMSLQK 9 F+F S+QK Sbjct: 458 FIFASMQK 465>NP_886553 Length = 1600 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 FLFMSLQK 9 F+F S+QK Sbjct: 622 FIFASMQK 629>NP_065799 Length = 1204 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PFLFMSLQK 9 PF F ++QK Sbjct: 20 PFAFEAMQK 28>NP_060198 Length = 496 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 PFLFMSLQK 9 PF F +QK Sbjct: 221 PFTFFDVQK 229>XP_005257594 Length = 1166 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PFLFMSLQK 9 PF F ++QK Sbjct: 20 PFAFEAMQK 28>XP_006722050 Length = 1196 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 PFLFMSLQK 9 PF F ++QK Sbjct: 12 PFAFEAMQK 20>XP_005257538 Length = 314 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 PFLFMSLQK 9 PF F +QK Sbjct: 221 PFTFFDVQK 229>XP_006722026 Length = 495 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 PFLFMSLQK 9 PF F +QK Sbjct: 220 PFTFFDVQK 228>XP_005268803 Length = 851 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 LFMSLQK 9 L+MS+QK Sbjct: 460 LYMSMQK 466>XP_005268802 Length = 852 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 LFMSLQK 9 L+MS+QK Sbjct: 461 LYMSMQK 467>XP_005268801 Length = 985 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 LFMSLQK 9 L+MS+QK Sbjct: 272 LYMSMQK 278>XP_005268800 Length = 986 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 LFMSLQK 9 L+MS+QK Sbjct: 273 LYMSMQK 279>XP_005268799 Length = 1174 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 LFMSLQK 9 L+MS+QK Sbjct: 461 LYMSMQK 467>XP_006716155 Length = 654 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 FLFMSLQK 9 F++++LQK Sbjct: 472 FIYLALQK 479>NP_075051 Length = 797 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 FLFMSLQK 9 F++++LQK Sbjct: 615 FIYLALQK 622>NP_056090 Length = 1173 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 LFMSLQK 9 L+MS+QK Sbjct: 460 LYMSMQK 466Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.341 0.149 0.450 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 376,656 Number of extensions: 601 Number of successful extensions: 38 Number of sequences better than 10000.0: 38 Number of HSP's gapped: 38 Number of HSP's successfully gapped: 38 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.5 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |