Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_722576 20 509 XP_005262424 20 509 NP_116176 18 1482 XP_005247896 18 1482 XP_006713857 18 1482 NP_001693 17 2528 XP_005251072 17 2528 NP_008862 17 3301 NP_001273164 17 3301 NP_001273166 17 3301 NP_001273163 17 3301 NP_001273162 17 3301 NP_703150 17 3301 XP_005253374 17 3301 XP_005253372 17 3301 XP_006710853 17 3301 XP_006710852 17 3301 XP_006710851 17 3301 XP_006710850 17 3301 XP_006710849 17 3301 XP_005271124 17 3301 XP_006710848 17 3301 XP_006710847 17 3301 XP_006710846 17 3301 NP_001694 17 3301 NP_940933 15 9605 NP_056051 15 9605 XP_006722513 15 9605 XP_006722512 15 9605 XP_006722510 15 9605 XP_005266750 15 9605 XP_005266749 15 9605 XP_005266748 15 9605 XP_005266747 15 9605 XP_005253033 15 9605 XP_005253030 15 9605 XP_006714219 15 9605 XP_006714218 15 9605 XP_006714217 15 9605 XP_006714216 15 9605 NP_919227 15 9605>NP_722576 Length = 3080 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 PALMVAITV 9 PA+MVAITV Sbjct: 2861 PAIMVAITV 2869>XP_005262424 Length = 2875 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 PALMVAITV 9 PA+MVAITV Sbjct: 2656 PAIMVAITV 2664>NP_116176 Length = 797 Score = 18.1 bits (35), Expect = 1482 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 PALMVAITV 9 PA++VAITV Sbjct: 578 PAIVVAITV 586>XP_005247896 Length = 502 Score = 18.1 bits (35), Expect = 1482 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 PALMVAITV 9 PA++VAITV Sbjct: 283 PAIVVAITV 291>XP_006713857 Length = 560 Score = 18.1 bits (35), Expect = 1482 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 PALMVAITV 9 PA++VAITV Sbjct: 341 PAIVVAITV 349>NP_001693 Length = 1584 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 PALMVAITV 9 PAL+VAI+V Sbjct: 1061 PALVVAISV 1069>XP_005251072 Length = 1586 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 PALMVAITV 9 PAL+VAI+V Sbjct: 1058 PALVVAISV 1066>NP_008862 Length = 496 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 PALMVAITV 9 PAL+ AITV Sbjct: 8 PALIFAITV 16>NP_001273164 Length = 497 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 PALMVAITV 9 PAL+ AITV Sbjct: 9 PALIFAITV 17>NP_001273166 Length = 535 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 PALMVAITV 9 PAL+ AITV Sbjct: 47 PALIFAITV 55>NP_001273163 Length = 497 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 PALMVAITV 9 PAL+ AITV Sbjct: 9 PALIFAITV 17>NP_001273162 Length = 520 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 PALMVAITV 9 PAL+ AITV Sbjct: 32 PALIFAITV 40>NP_703150 Length = 520 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 PALMVAITV 9 PAL+ AITV Sbjct: 32 PALIFAITV 40>XP_005253374 Length = 497 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 PALMVAITV 9 PAL+ AITV Sbjct: 9 PALIFAITV 17>XP_005253372 Length = 497 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 PALMVAITV 9 PAL+ AITV Sbjct: 9 PALIFAITV 17>XP_006710853 Length = 1478 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 PALMVAITV 9 PAL+VA++V Sbjct: 991 PALVVAVSV 999>XP_006710852 Length = 1497 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 PALMVAITV 9 PAL+VA++V Sbjct: 991 PALVVAVSV 999>XP_006710851 Length = 1511 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 PALMVAITV 9 PAL+VA++V Sbjct: 991 PALVVAVSV 999>XP_006710850 Length = 1530 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 PALMVAITV 9 PAL+VA++V Sbjct: 991 PALVVAVSV 999>XP_006710849 Length = 1530 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 PALMVAITV 9 PAL+VA++V Sbjct: 991 PALVVAVSV 999>XP_005271124 Length = 1551 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 PALMVAITV 9 PAL+VA++V Sbjct: 1046 PALVVAVSV 1054>XP_006710848 Length = 1552 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 PALMVAITV 9 PAL+VA++V Sbjct: 1046 PALVVAVSV 1054>XP_006710847 Length = 1566 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 PALMVAITV 9 PAL+VA++V Sbjct: 1046 PALVVAVSV 1054>XP_006710846 Length = 1584 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 PALMVAITV 9 PAL+VA++V Sbjct: 1046 PALVVAVSV 1054>NP_001694 Length = 1585 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 PALMVAITV 9 PAL+VA++V Sbjct: 1046 PALVVAVSV 1054>NP_940933 Length = 1147 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LMVAITV 9 LMVA+TV Sbjct: 1056 LMVALTV 1062>NP_056051 Length = 1469 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 PALMVAIT 8 PAL+VA++ Sbjct: 991 PALIVAVS 998>XP_006722513 Length = 787 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LMVAITV 9 LMVA+TV Sbjct: 696 LMVALTV 702>XP_006722512 Length = 841 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LMVAITV 9 LMVA+TV Sbjct: 750 LMVALTV 756>XP_006722510 Length = 1054 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LMVAITV 9 LMVA+TV Sbjct: 963 LMVALTV 969>XP_005266750 Length = 1106 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LMVAITV 9 LMVA+TV Sbjct: 1015 LMVALTV 1021>XP_005266749 Length = 1118 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LMVAITV 9 LMVA+TV Sbjct: 1056 LMVALTV 1062>XP_005266748 Length = 1136 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LMVAITV 9 LMVA+TV Sbjct: 1056 LMVALTV 1062>XP_005266747 Length = 1142 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LMVAITV 9 LMVA+TV Sbjct: 1056 LMVALTV 1062>XP_005253033 Length = 258 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 PALMVAITV 9 P+L++ ITV Sbjct: 40 PSLLLTITV 48>XP_005253030 Length = 336 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 PALMVAITV 9 P+L++ ITV Sbjct: 40 PSLLLTITV 48>XP_006714219 Length = 806 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 PALMVAIT 8 PAL+VA++ Sbjct: 557 PALIVAVS 564>XP_006714218 Length = 846 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 PALMVAIT 8 PAL+VA++ Sbjct: 362 PALIVAVS 369>XP_006714217 Length = 1013 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 PALMVAIT 8 PAL+VA++ Sbjct: 544 PALIVAVS 551>XP_006714216 Length = 1026 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 PALMVAIT 8 PAL+VA++ Sbjct: 557 PALIVAVS 564>NP_919227 Length = 419 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 PALMVAI 7 PAL+VA+ Sbjct: 40 PALLVAV 46Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.333 0.136 0.362 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 271,773 Number of extensions: 386 Number of successful extensions: 41 Number of sequences better than 10000.0: 41 Number of HSP's gapped: 41 Number of HSP's successfully gapped: 41 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.3 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |