Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_055365 20 390 NP_060626 18 1935 NP_056193 18 1935 NP_001136069 17 2528 NP_001180584 16 5631 NP_001180586 16 5631 NP_001180583 16 5631 NP_001093877 16 5631 NP_001180582 16 5631 NP_001028218 16 5631 NP_001093878 16 5631 XP_006722356 16 5631 NP_001006658 16 7355 NP_065830 16 7355 NP_001107604 15 9605 XP_005253558 15 9605 XP_006719219 15 9605 XP_005253556 15 9605 XP_005253555 15 9605 XP_006712765 15 9605 XP_006712764 15 9605 XP_005246844 15 9605 XP_006712763 15 9605 XP_006712762 15 9605 XP_006712761 15 9605>NP_055365 Length = 1032 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NYMITMRLA 9 NYMI MRLA Sbjct: 206 NYMIAMRLA 214>NP_060626 Length = 4363 Score = 17.7 bits (34), Expect = 1935 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NYMITMRL 8 NYM+ MRL Sbjct: 3222 NYMVRMRL 3229>NP_056193 Length = 4388 Score = 17.7 bits (34), Expect = 1935 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NYMITMRL 8 NYM+ MRL Sbjct: 3247 NYMVRMRL 3254>NP_001136069 Length = 361 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 NYMITMRLA 9 NY IT RLA Sbjct: 136 NYAITSRLA 144>NP_001180584 Length = 187 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 YMITMRLA 9 YM+ +RLA Sbjct: 124 YMVVLRLA 131>NP_001180586 Length = 187 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 YMITMRLA 9 YM+ +RLA Sbjct: 124 YMVVLRLA 131>NP_001180583 Length = 187 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 YMITMRLA 9 YM+ +RLA Sbjct: 124 YMVVLRLA 131>NP_001093877 Length = 187 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 YMITMRLA 9 YM+ +RLA Sbjct: 124 YMVVLRLA 131>NP_001180582 Length = 187 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 YMITMRLA 9 YM+ +RLA Sbjct: 124 YMVVLRLA 131>NP_001028218 Length = 187 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 YMITMRLA 9 YM+ +RLA Sbjct: 124 YMVVLRLA 131>NP_001093878 Length = 173 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 YMITMRLA 9 YM+ +RLA Sbjct: 110 YMVVLRLA 117>XP_006722356 Length = 173 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 YMITMRLA 9 YM+ +RLA Sbjct: 110 YMVVLRLA 117>NP_001006658 Length = 1181 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 NYMITMRLA 9 N+MI M+L+ Sbjct: 188 NFMIKMKLS 196>NP_065830 Length = 1170 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 NYMITMRLA 9 N+MI M+L+ Sbjct: 188 NFMIKMKLS 196>NP_001107604 Length = 2694 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 NYMITM 6 NY+ITM Sbjct: 117 NYVITM 122>XP_005253558 Length = 897 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 NYMITMR 7 N+++TMR Sbjct: 253 NFLLTMR 259>XP_006719219 Length = 910 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 NYMITMR 7 N+++TMR Sbjct: 322 NFLLTMR 328>XP_005253556 Length = 944 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 NYMITMR 7 N+++TMR Sbjct: 322 NFLLTMR 328>XP_005253555 Length = 966 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 NYMITMR 7 N+++TMR Sbjct: 322 NFLLTMR 328>XP_006712765 Length = 2679 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 NYMITM 6 NY+ITM Sbjct: 117 NYVITM 122>XP_006712764 Length = 2697 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 NYMITM 6 NY+ITM Sbjct: 117 NYVITM 122>XP_005246844 Length = 2707 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 NYMITM 6 NY+ITM Sbjct: 117 NYVITM 122>XP_006712763 Length = 2716 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 NYMITM 6 NY+ITM Sbjct: 117 NYVITM 122>XP_006712762 Length = 2723 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 NYMITM 6 NY+ITM Sbjct: 117 NYVITM 122>XP_006712761 Length = 2736 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 NYMITM 6 NY+ITM Sbjct: 117 NYVITM 122Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.341 0.137 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 269,310 Number of extensions: 286 Number of successful extensions: 25 Number of sequences better than 10000.0: 25 Number of HSP's gapped: 25 Number of HSP's successfully gapped: 25 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.6 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |