Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_722576 20 390 XP_005262424 20 390 NP_057013 17 2528 NP_660199 17 2528 NP_660198 17 2528 NP_001191759 17 2528 NP_660200 17 2528 NP_001137139 16 5631 NP_067034 16 5631 NP_660341 16 7355 NP_055323 16 7355 XP_005261394 16 7355 XP_005261392 16 7355 NP_689639 16 7355 NP_000799 15 9605 NP_000798 15 9605 NP_001107647 15 9605 NP_001271282 15 9605 NP_001271281 15 9605 NP_065826 15 9605 NP_001253977 15 9605 NP_000801 15 9605 XP_006724874 15 9605 XP_005274716 15 9605 XP_005268315 15 9605 XP_006720522 15 9605 XP_006716762 15 9605 XP_006716760 15 9605 XP_006716759 15 9605 XP_006716757 15 9605 XP_005251165 15 9605 XP_005251164 15 9605 XP_005251163 15 9605 XP_006716755 15 9605 XP_006716754 15 9605 XP_006716753 15 9605 XP_005272199 15 9605 XP_006714065 15 9605 NP_055644 15 9605 NP_001158509 15 9605>NP_722576 Length = 3080 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NVTVFTSKK 9 NVT FTSKK Sbjct: 1519 NVTAFTSKK 1527>XP_005262424 Length = 2875 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NVTVFTSKK 9 NVT FTSKK Sbjct: 1314 NVTAFTSKK 1322>NP_057013 Length = 373 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 NVTVFTSKK 9 N+T FT+KK Sbjct: 114 NLTFFTTKK 122>NP_660199 Length = 373 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 NVTVFTSKK 9 N+T FT+KK Sbjct: 114 NLTFFTTKK 122>NP_660198 Length = 373 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 NVTVFTSKK 9 N+T FT+KK Sbjct: 114 NLTFFTTKK 122>NP_001191759 Length = 373 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 NVTVFTSKK 9 N+T FT+KK Sbjct: 114 NLTFFTTKK 122>NP_660200 Length = 373 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 NVTVFTSKK 9 N+T FT+KK Sbjct: 114 NLTFFTTKK 122>NP_001137139 Length = 693 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 NVTVFT 6 NVTVFT Sbjct: 495 NVTVFT 500>NP_067034 Length = 693 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 NVTVFT 6 NVTVFT Sbjct: 495 NVTVFT 500>NP_660341 Length = 373 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 NVTVFTSK 8 N+T+FT++ Sbjct: 298 NLTIFTAR 305>NP_055323 Length = 190 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 NVTVFTSK 8 N+T+FT++ Sbjct: 115 NLTIFTAR 122>XP_005261394 Length = 202 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 NVTVFTSK 8 N+T+FT++ Sbjct: 127 NLTIFTAR 134>XP_005261392 Length = 217 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 NVTVFTSK 8 N+T+FT++ Sbjct: 115 NLTIFTAR 122>NP_689639 Length = 386 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 NVTVFTSK 8 N+T+FT++ Sbjct: 311 NLTIFTAR 318>NP_000799 Length = 492 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 1 NVTVFT 6 N+T+FT Sbjct: 63 NITIFT 68>NP_000798 Length = 451 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 1 NVTVFT 6 N+T+FT Sbjct: 38 NITIFT 43>NP_001107647 Length = 451 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 1 NVTVFT 6 N+T+FT Sbjct: 38 NITIFT 43>NP_001271282 Length = 675 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 VFTSKK 9 +FTSKK Sbjct: 636 IFTSKK 641>NP_001271281 Length = 902 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 VFTSKK 9 +FTSKK Sbjct: 872 IFTSKK 877>NP_065826 Length = 1013 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 VFTSKK 9 +FTSKK Sbjct: 974 IFTSKK 979>NP_001253977 Length = 926 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 VFTSKK 9 +FTSKK Sbjct: 887 IFTSKK 892>NP_000801 Length = 462 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 1 NVTVFT 6 N+T+FT Sbjct: 45 NITIFT 50>XP_006724874 Length = 340 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 1 NVTVFT 6 N+T+FT Sbjct: 63 NITIFT 68>XP_005274716 Length = 491 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 1 NVTVFT 6 N+T+FT Sbjct: 63 NITIFT 68>XP_005268315 Length = 462 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 1 NVTVFT 6 N+T+FT Sbjct: 45 NITIFT 50>XP_006720522 Length = 462 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 1 NVTVFT 6 N+T+FT Sbjct: 45 NITIFT 50>XP_006716762 Length = 1571 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 VTVFTSK 8 ++VFTSK Sbjct: 1252 ISVFTSK 1258>XP_006716760 Length = 428 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 VTVFTSK 8 ++VFTSK Sbjct: 109 ISVFTSK 115>XP_006716759 Length = 444 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 VTVFTSK 8 ++VFTSK Sbjct: 125 ISVFTSK 131>XP_006716757 Length = 1356 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 VTVFTSK 8 ++VFTSK Sbjct: 1037 ISVFTSK 1043>XP_005251165 Length = 1532 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 VTVFTSK 8 ++VFTSK Sbjct: 1213 ISVFTSK 1219>XP_005251164 Length = 1552 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 VTVFTSK 8 ++VFTSK Sbjct: 1233 ISVFTSK 1239>XP_005251163 Length = 1574 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 VTVFTSK 8 ++VFTSK Sbjct: 1255 ISVFTSK 1261>XP_006716755 Length = 1634 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 VTVFTSK 8 ++VFTSK Sbjct: 1315 ISVFTSK 1321>XP_006716754 Length = 1655 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 VTVFTSK 8 ++VFTSK Sbjct: 1336 ISVFTSK 1342>XP_006716753 Length = 1656 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 VTVFTSK 8 ++VFTSK Sbjct: 1337 ISVFTSK 1343>XP_005272199 Length = 1032 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VTVFTSKK 9 VTV T+KK Sbjct: 265 VTVVTTKK 272>XP_006714065 Length = 451 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 1 NVTVFT 6 N+T+FT Sbjct: 38 NITIFT 43>NP_055644 Length = 1031 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VTVFTSKK 9 VTV T+KK Sbjct: 265 VTVVTTKK 272>NP_001158509 Length = 462 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 1 NVTVFT 6 N+T+FT Sbjct: 45 NITIFT 50Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.310 0.118 0.296 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 353,228 Number of extensions: 524 Number of successful extensions: 40 Number of sequences better than 10000.0: 40 Number of HSP's gapped: 40 Number of HSP's successfully gapped: 40 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.6 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |