Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_002430 19 869 XP_005257832 18 1482 NP_219481 18 1482 NP_065979 17 4312 XP_006714727 17 4312 NP_001017969 16 5631 XP_006716793 16 5631 XP_005251442 16 5631 NP_940978 16 7355 NP_075069 16 7355 NP_001139281 16 7355 NP_001275964 16 7355 NP_001275963 16 7355 NP_640332 16 7355 NP_001070654 16 7355 NP_079005 16 7355 NP_958930 16 7355 NP_958929 16 7355 NP_958931 16 7355 XP_006723507 16 7355 XP_005259397 16 7355 XP_006723449 16 7355 XP_006718731 16 7355 XP_006718730 16 7355 XP_006710699 16 7355 XP_006710698 16 7355 XP_005244806 16 7355 XP_006710697 16 7355 XP_006710696 16 7355 NP_000197 15 9605 NP_001367 15 9605 NP_061984 15 9605 NP_000984 15 9605 NP_005460 15 9605 XP_005260297 15 9605 XP_006720951 15 9605 XP_006720950 15 9605 NP_036500 15 9605>NP_002430 Length = 1137 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NVTTLRNLE 9 N TTLRNLE Sbjct: 538 NGTTLRNLE 546>XP_005257832 Length = 330 Score = 18.1 bits (35), Expect = 1482 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 VTTLRNLE 9 +TT+RNLE Sbjct: 65 ITTIRNLE 72>NP_219481 Length = 321 Score = 18.1 bits (35), Expect = 1482 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 VTTLRNLE 9 +TT+RNLE Sbjct: 56 ITTIRNLE 63>NP_065979 Length = 1215 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 NVTTLRNLE 9 N+T++ NLE Sbjct: 618 NITSITNLE 626>XP_006714727 Length = 610 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 NVTTLRNLE 9 N+T++ NLE Sbjct: 13 NITSITNLE 21>NP_001017969 Length = 2103 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 NVTTLRNLE 9 N TT+ NLE Sbjct: 958 NETTVENLE 966>XP_006716793 Length = 1317 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 NVTTLRNLE 9 N TT+ NLE Sbjct: 172 NETTVENLE 180>XP_005251442 Length = 2073 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 NVTTLRNLE 9 N TT+ NLE Sbjct: 928 NETTVENLE 936>NP_940978 Length = 2045 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 TLRNLE 9 TLRNLE Sbjct: 142 TLRNLE 147>NP_075069 Length = 458 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VTTLRNLE 9 +TTLRN E Sbjct: 147 ITTLRNGE 154>NP_001139281 Length = 2036 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 VTTLRN 7 VTTLRN Sbjct: 1979 VTTLRN 1984>NP_001275964 Length = 542 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 TTLRNL 8 TTLRNL Sbjct: 388 TTLRNL 393>NP_001275963 Length = 619 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 TTLRNL 8 TTLRNL Sbjct: 465 TTLRNL 470>NP_640332 Length = 313 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 TLRNLE 9 TLRNLE Sbjct: 275 TLRNLE 280>NP_001070654 Length = 2003 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 VTTLRN 7 VTTLRN Sbjct: 1946 VTTLRN 1951>NP_079005 Length = 1995 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 VTTLRN 7 VTTLRN Sbjct: 1938 VTTLRN 1943>NP_958930 Length = 619 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 TTLRNL 8 TTLRNL Sbjct: 465 TTLRNL 470>NP_958929 Length = 619 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 TTLRNL 8 TTLRNL Sbjct: 465 TTLRNL 470>NP_958931 Length = 637 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 TTLRNL 8 TTLRNL Sbjct: 483 TTLRNL 488>XP_006723507 Length = 328 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 TLRNLE 9 TLRNLE Sbjct: 290 TLRNLE 295>XP_005259397 Length = 328 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 TLRNLE 9 TLRNLE Sbjct: 290 TLRNLE 295>XP_006723449 Length = 2003 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 VTTLRN 7 VTTLRN Sbjct: 1946 VTTLRN 1951>XP_006718731 Length = 330 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VTTLRNLE 9 +TTLRN E Sbjct: 19 ITTLRNGE 26>XP_006718730 Length = 343 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VTTLRNLE 9 +TTLRN E Sbjct: 32 ITTLRNGE 39>XP_006710699 Length = 1766 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 TLRNLE 9 TLRNLE Sbjct: 142 TLRNLE 147>XP_006710698 Length = 1907 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 TLRNLE 9 TLRNLE Sbjct: 142 TLRNLE 147>XP_005244806 Length = 2049 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 TLRNLE 9 TLRNLE Sbjct: 142 TLRNLE 147>XP_006710697 Length = 2053 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 TLRNLE 9 TLRNLE Sbjct: 142 TLRNLE 147>XP_006710696 Length = 2057 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 TLRNLE 9 TLRNLE Sbjct: 142 TLRNLE 147>NP_000197 Length = 369 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 VTTLRNLE 9 + TL+NLE Sbjct: 290 IPTLKNLE 297>NP_001367 Length = 4646 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 VTTLRNLE 9 +TTL NL+ Sbjct: 3767 ITTLENLK 3774>NP_061984 Length = 254 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 NVTTLRN 7 NVT LRN Sbjct: 143 NVTWLRN 149>NP_000984 Length = 125 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 VTTLRNLE 9 VTT +NL+ Sbjct: 111 VTTFKNLQ 118>NP_005460 Length = 319 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VTTLRNLE 9 VTT+ NLE Sbjct: 28 VTTVLNLE 35>XP_005260297 Length = 254 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VTTLRNLE 9 VTT+ NLE Sbjct: 28 VTTVLNLE 35>XP_006720951 Length = 312 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 VTTLRNLE 9 + TLRN+E Sbjct: 289 IYTLRNME 296>XP_006720950 Length = 312 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 VTTLRNLE 9 + TLRN+E Sbjct: 289 IYTLRNME 296>NP_036500 Length = 312 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 VTTLRNLE 9 + TLRN+E Sbjct: 289 IYTLRNME 296Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.309 0.125 0.314 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 319,710 Number of extensions: 487 Number of successful extensions: 38 Number of sequences better than 10000.0: 38 Number of HSP's gapped: 38 Number of HSP's successfully gapped: 38 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |