Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_115927 20 390 XP_006715292 20 390 NP_775771 18 1935 XP_006720466 18 1935 XP_005254230 18 1935 XP_006720465 18 1935 XP_005254228 18 1935 NP_001108091 16 7355 NP_001108092 16 7355 NP_001108090 16 7355 NP_002397 16 7355 NP_001108089 16 7355 NP_036475 16 7355 XP_006720386 16 7355 XP_006720385 16 7355 XP_005268275 16 7355 XP_006714930 16 7355 XP_006714929 16 7355 XP_005265973 16 7355 XP_005265972 16 7355 XP_006714524 16 7355 XP_005248331 16 7355 NP_892022 16 7355 NP_055816 15 9605 NP_001073276 15 9605 NP_001073275 15 9605 NP_055039 15 9605 NP_056493 15 9605 NP_036263 15 9605 XP_005276461 15 9605 XP_006719869 15 9605 XP_006719868 15 9605 XP_005266408 15 9605 XP_005266407 15 9605 XP_005266403 15 9605 XP_006719867 15 9605 XP_006719866 15 9605 XP_005266405 15 9605 XP_005266404 15 9605 XP_006714394 15 9605 XP_005263325 15 9605 XP_005263324 15 9605 NP_005851 15 9605>NP_115927 Length = 1321 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NVAGFRGMV 9 NVAGFRG V Sbjct: 195 NVAGFRGTV 203>XP_006715292 Length = 759 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NVAGFRGMV 9 NVAGFRG V Sbjct: 182 NVAGFRGTV 190>NP_775771 Length = 1244 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 VAGFRGMV 9 VAGFRG V Sbjct: 183 VAGFRGTV 190>XP_006720466 Length = 1175 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 VAGFRGMV 9 VAGFRG V Sbjct: 114 VAGFRGTV 121>XP_005254230 Length = 1175 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 VAGFRGMV 9 VAGFRG V Sbjct: 114 VAGFRGTV 121>XP_006720465 Length = 1239 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 VAGFRGMV 9 VAGFRG V Sbjct: 178 VAGFRGTV 185>XP_005254228 Length = 1250 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 VAGFRGMV 9 VAGFRG V Sbjct: 189 VAGFRGTV 196>NP_001108091 Length = 445 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 AGFRGMV 9 AG+RG+V Sbjct: 414 AGYRGIV 420>NP_001108092 Length = 445 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 AGFRGMV 9 AG+RG+V Sbjct: 414 AGYRGIV 420>NP_001108090 Length = 445 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 AGFRGMV 9 AG+RG+V Sbjct: 414 AGYRGIV 420>NP_002397 Length = 445 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 AGFRGMV 9 AG+RG+V Sbjct: 414 AGYRGIV 420>NP_001108089 Length = 445 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 AGFRGMV 9 AG+RG+V Sbjct: 414 AGYRGIV 420>NP_036475 Length = 1086 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 NVAGFRGMV 9 N+AG++ +V Sbjct: 197 NIAGYKAVV 205>XP_006720386 Length = 1571 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 NVAGFRG 7 NVA FRG Sbjct: 257 NVATFRG 263>XP_006720385 Length = 1683 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 NVAGFRG 7 NVA FRG Sbjct: 257 NVATFRG 263>XP_005268275 Length = 1684 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 NVAGFRG 7 NVA FRG Sbjct: 261 NVATFRG 267>XP_006714930 Length = 445 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 AGFRGMV 9 AG+RG+V Sbjct: 414 AGYRGIV 420>XP_006714929 Length = 445 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 AGFRGMV 9 AG+RG+V Sbjct: 414 AGYRGIV 420>XP_005265973 Length = 445 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 AGFRGMV 9 AG+RG+V Sbjct: 414 AGYRGIV 420>XP_005265972 Length = 445 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 AGFRGMV 9 AG+RG+V Sbjct: 414 AGYRGIV 420>XP_006714524 Length = 955 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 NVAGFRGMV 9 N+AG++ +V Sbjct: 66 NIAGYKAVV 74>XP_005248331 Length = 1086 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 NVAGFRGMV 9 N+AG++ +V Sbjct: 197 NIAGYKAVV 205>NP_892022 Length = 1086 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 NVAGFRGMV 9 N+AG++ +V Sbjct: 197 NIAGYKAVV 205>NP_055816 Length = 3664 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 VAGFRG 7 V+GFRG Sbjct: 104 VSGFRG 109>NP_001073276 Length = 388 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 2 VAGFRGM 8 ++GF+GM Sbjct: 345 ISGFQGM 351>NP_001073275 Length = 388 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 2 VAGFRGM 8 ++GF+GM Sbjct: 345 ISGFQGM 351>NP_055039 Length = 388 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 2 VAGFRGM 8 ++GF+GM Sbjct: 345 ISGFQGM 351>NP_056493 Length = 2946 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 4 GFRGM 8 GFRGM Sbjct: 1306 GFRGM 1310>NP_036263 Length = 224 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 VAGFRGMV 9 V GF GMV Sbjct: 12 VLGFLGMV 19>XP_005276461 Length = 388 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 2 VAGFRGM 8 ++GF+GM Sbjct: 345 ISGFQGM 351>XP_006719869 Length = 2943 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 4 GFRGM 8 GFRGM Sbjct: 1306 GFRGM 1310>XP_006719868 Length = 2938 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 4 GFRGM 8 GFRGM Sbjct: 1306 GFRGM 1310>XP_005266408 Length = 1934 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 4 GFRGM 8 GFRGM Sbjct: 1306 GFRGM 1310>XP_005266407 Length = 2641 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 4 GFRGM 8 GFRGM Sbjct: 980 GFRGM 984>XP_005266403 Length = 2941 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 4 GFRGM 8 GFRGM Sbjct: 1306 GFRGM 1310>XP_006719867 Length = 2961 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 4 GFRGM 8 GFRGM Sbjct: 1306 GFRGM 1310>XP_006719866 Length = 2962 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 4 GFRGM 8 GFRGM Sbjct: 1306 GFRGM 1310>XP_005266405 Length = 2964 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 4 GFRGM 8 GFRGM Sbjct: 1306 GFRGM 1310>XP_005266404 Length = 2967 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 4 GFRGM 8 GFRGM Sbjct: 1306 GFRGM 1310>XP_006714394 Length = 960 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 VAGFRG 7 V+GFRG Sbjct: 26 VSGFRG 31>XP_005263325 Length = 970 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 VAGFRG 7 V+GFRG Sbjct: 26 VSGFRG 31>XP_005263324 Length = 1004 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 VAGFRG 7 V+GFRG Sbjct: 26 VSGFRG 31>NP_005851 Length = 263 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 NVAGFRGMV 9 N+ GF G+V Sbjct: 82 NLLGFLGLV 90Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.333 0.147 0.444 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 504,652 Number of extensions: 879 Number of successful extensions: 43 Number of sequences better than 10000.0: 43 Number of HSP's gapped: 43 Number of HSP's successfully gapped: 43 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.2 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |