Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_003290 20 390 XP_005272419 18 1935 NP_116206 17 3301 NP_778203 17 3301 NP_001834 17 3301 NP_001073869 17 3301 NP_085046 17 3301 XP_006722933 17 3301 XP_006722932 17 3301 XP_006722931 17 3301 XP_006722930 17 3301 XP_005259697 17 3301 XP_006722929 17 3301 XP_006719304 17 3301 XP_005268708 17 3301 NP_001186978 17 4312 NP_001078949 17 4312 NP_000313 16 5631 XP_005249318 16 5631 NP_001957 16 7355 NP_001159887 16 7355 XP_006713588 16 7355 NP_001350 15 9605 NP_001243556 15 9605 NP_003948 15 9605 NP_001243558 15 9605 XP_006723741 15 9605 XP_006718441 15 9605 XP_005253275 15 9605 XP_006718438 15 9605 XP_006718437 15 9605 XP_005276177 15 9605 XP_002345622 15 9605 NP_115806 15 9605>NP_003290 Length = 803 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NTLGRGMTI 9 NTLGRG TI Sbjct: 239 NTLGRGTTI 247>XP_005272419 Length = 216 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 NTLGRGMTI 9 NTLGRG + Sbjct: 206 NTLGRGFLV 214>NP_116206 Length = 728 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 TLGRGMT 8 TLGRGM+ Sbjct: 719 TLGRGMS 725>NP_778203 Length = 1007 Score = 16.9 bits (32), Expect = 3301 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 NTLGRG 6 NTLGRG Sbjct: 674 NTLGRG 679>NP_001834 Length = 1018 Score = 16.9 bits (32), Expect = 3301 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 NTLGRG 6 NTLGRG Sbjct: 685 NTLGRG 690>NP_001073869 Length = 1357 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NTLGRGMT 8 NTLG G+T Sbjct: 849 NTLGSGVT 856Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 NTLGRGMT 8 NT G G+T Sbjct: 651 NTFGSGVT 658>NP_085046 Length = 942 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 TLGRGMT 8 TLGRGM+ Sbjct: 933 TLGRGMS 939>XP_006722933 Length = 1240 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NTLGRGMT 8 NTLG G+T Sbjct: 732 NTLGSGVT 739Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 NTLGRGMT 8 NT G G+T Sbjct: 666 NTFGSGVT 673>XP_006722932 Length = 1306 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NTLGRGMT 8 NTLG G+T Sbjct: 798 NTLGSGVT 805Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 NTLGRGMT 8 NT G G+T Sbjct: 666 NTFGSGVT 673>XP_006722931 Length = 1371 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NTLGRGMT 8 NTLG G+T Sbjct: 863 NTLGSGVT 870Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 NTLGRGMT 8 NT G G+T Sbjct: 665 NTFGSGVT 672>XP_006722930 Length = 1372 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NTLGRGMT 8 NTLG G+T Sbjct: 864 NTLGSGVT 871Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 NTLGRGMT 8 NT G G+T Sbjct: 666 NTFGSGVT 673>XP_005259697 Length = 1372 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NTLGRGMT 8 NTLG G+T Sbjct: 864 NTLGSGVT 871Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 NTLGRGMT 8 NT G G+T Sbjct: 666 NTFGSGVT 673>XP_006722929 Length = 1372 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NTLGRGMT 8 NTLG G+T Sbjct: 864 NTLGSGVT 871Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 NTLGRGMT 8 NT G G+T Sbjct: 666 NTFGSGVT 673>XP_006719304 Length = 1018 Score = 16.9 bits (32), Expect = 3301 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 NTLGRG 6 NTLGRG Sbjct: 685 NTLGRG 690>XP_005268708 Length = 1018 Score = 16.9 bits (32), Expect = 3301 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 NTLGRG 6 NTLGRG Sbjct: 685 NTLGRG 690>NP_001186978 Length = 2715 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 NTLGRGMTI 9 NTL RG+ I Sbjct: 788 NTLARGLII 796>NP_001078949 Length = 162 Score = 16.5 bits (31), Expect = 4312 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 LGRGMTI 9 LGRG+T+ Sbjct: 11 LGRGLTV 17>NP_000313 Length = 346 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 NTLGRGM 7 NTLG+G+ Sbjct: 128 NTLGQGL 134>XP_005249318 Length = 205 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 NTLGRGM 7 NTLG+G+ Sbjct: 128 NTLGQGL 134>NP_001957 Length = 723 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TLGRGMTI 9 T+GRG+ I Sbjct: 307 TMGRGIVI 314>NP_001159887 Length = 627 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TLGRGMTI 9 T+GRG+ I Sbjct: 211 TMGRGIVI 218>XP_006713588 Length = 515 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TLGRGMTI 9 T+GRG+ I Sbjct: 99 TMGRGIVI 106>NP_001350 Length = 335 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 LGRGMT 8 LG+GMT Sbjct: 71 LGKGMT 76>NP_001243556 Length = 736 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 TLGRGMT 8 TLG+G T Sbjct: 24 TLGKGQT 30>NP_003948 Length = 668 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 TLGRGMT 8 TLG+G T Sbjct: 24 TLGKGQT 30>NP_001243558 Length = 674 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 TLGRGMT 8 TLG+G T Sbjct: 24 TLGKGQT 30>XP_006723741 Length = 643 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 TLGRGM 7 TLGRG+ Sbjct: 38 TLGRGL 43>XP_006718441 Length = 690 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 TLGRGMT 8 TLG+G T Sbjct: 24 TLGKGQT 30>XP_005253275 Length = 720 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 TLGRGMT 8 TLG+G T Sbjct: 24 TLGKGQT 30>XP_006718438 Length = 742 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 TLGRGMT 8 TLG+G T Sbjct: 24 TLGKGQT 30>XP_006718437 Length = 758 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 TLGRGMT 8 TLG+G T Sbjct: 24 TLGKGQT 30>XP_005276177 Length = 643 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 TLGRGM 7 TLGRG+ Sbjct: 38 TLGRGL 43>XP_002345622 Length = 613 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 TLGRGM 7 TLGRG+ Sbjct: 33 TLGRGL 38>NP_115806 Length = 778 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 TLGRGMT 8 TLG+G T Sbjct: 39 TLGKGQT 45Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.321 0.140 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 483,860 Number of extensions: 488 Number of successful extensions: 41 Number of sequences better than 10000.0: 34 Number of HSP's gapped: 41 Number of HSP's successfully gapped: 41 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.8 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |