Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000537 19 665 NP_001263689 19 665 NP_001119584 19 665 NP_001119586 19 665 NP_001263625 19 665 NP_001119590 19 665 NP_001263690 19 665 NP_001119585 19 665 NP_001263624 19 665 NP_001119588 19 665 NP_001119587 19 665 NP_001119589 19 665 NP_001263627 19 665 NP_001263628 19 665 NP_001263626 19 665 NP_001137469 17 4312 NP_001137468 17 4312 NP_060715 17 4312 NP_005804 16 7355 NP_002696 16 7355 NP_002733 16 7355 NP_001073351 16 7355 NP_001073350 16 7355 NP_001073349 16 7355 NP_057541 16 7355 NP_001191443 16 7355 XP_005258773 16 7355 XP_006720965 16 7355 XP_005267916 16 7355 XP_006712043 16 7355 XP_006712042 16 7355 XP_006712041 16 7355 XP_005264295 16 7355 XP_005264294 16 7355 NP_009052 15 9605 NP_005968 15 9605 NP_689417 15 9605 NP_898865 15 9605 NP_898864 15 9605 NP_000520 15 9605 XP_006720248 15 9605 XP_005267848 15 9605 XP_006719917 15 9605 XP_005266543 15 9605 XP_005266542 15 9605 NP_060413 15 9605>NP_000537 Length = 393 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NTFRRSVVV 9 NTFR SVVV Sbjct: 210 NTFRHSVVV 218>NP_001263689 Length = 354 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NTFRRSVVV 9 NTFR SVVV Sbjct: 171 NTFRHSVVV 179>NP_001119584 Length = 393 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NTFRRSVVV 9 NTFR SVVV Sbjct: 210 NTFRHSVVV 218>NP_001119586 Length = 341 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NTFRRSVVV 9 NTFR SVVV Sbjct: 210 NTFRHSVVV 218>NP_001263625 Length = 302 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NTFRRSVVV 9 NTFR SVVV Sbjct: 171 NTFRHSVVV 179>NP_001119590 Length = 354 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NTFRRSVVV 9 NTFR SVVV Sbjct: 171 NTFRHSVVV 179>NP_001263690 Length = 354 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NTFRRSVVV 9 NTFR SVVV Sbjct: 171 NTFRHSVVV 179>NP_001119585 Length = 346 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NTFRRSVVV 9 NTFR SVVV Sbjct: 210 NTFRHSVVV 218>NP_001263624 Length = 307 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NTFRRSVVV 9 NTFR SVVV Sbjct: 171 NTFRHSVVV 179>NP_001119588 Length = 209 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NTFRRSVVV 9 NTFR SVVV Sbjct: 78 NTFRHSVVV 86>NP_001119587 Length = 261 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NTFRRSVVV 9 NTFR SVVV Sbjct: 78 NTFRHSVVV 86>NP_001119589 Length = 214 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NTFRRSVVV 9 NTFR SVVV Sbjct: 78 NTFRHSVVV 86>NP_001263627 Length = 182 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NTFRRSVVV 9 NTFR SVVV Sbjct: 51 NTFRHSVVV 59>NP_001263628 Length = 187 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NTFRRSVVV 9 NTFR SVVV Sbjct: 51 NTFRHSVVV 59>NP_001263626 Length = 234 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NTFRRSVVV 9 NTFR SVVV Sbjct: 51 NTFRHSVVV 59>NP_001137469 Length = 801 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 NTFRRSVVV 9 NTF + VVV Sbjct: 273 NTFNKDVVV 281>NP_001137468 Length = 953 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 NTFRRSVVV 9 NTF + VVV Sbjct: 425 NTFNKDVVV 433>NP_060715 Length = 1010 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 NTFRRSVVV 9 NTF + VVV Sbjct: 482 NTFNKDVVV 490>NP_005804 Length = 890 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 TFRRSVV 8 +FRRSVV Sbjct: 731 SFRRSVV 737>NP_002696 Length = 1756 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 NTFRRSVVV 9 N RRS+VV Sbjct: 1652 NHLRRSIVV 1660>NP_002733 Length = 912 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 TFRRSVV 8 +FRRSVV Sbjct: 738 SFRRSVV 744>NP_001073351 Length = 721 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 TFRRSVV 8 +FRRSVV Sbjct: 549 SFRRSVV 555>NP_001073350 Length = 878 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 TFRRSVV 8 +FRRSVV Sbjct: 706 SFRRSVV 712>NP_001073349 Length = 878 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 TFRRSVV 8 +FRRSVV Sbjct: 706 SFRRSVV 712>NP_057541 Length = 878 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 TFRRSVV 8 +FRRSVV Sbjct: 706 SFRRSVV 712>NP_001191443 Length = 714 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 NTFRRSV 7 NT+RRS+ Sbjct: 7 NTYRRSL 13>XP_005258773 Length = 721 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 TFRRSVV 8 +FRRSVV Sbjct: 549 SFRRSVV 555>XP_006720965 Length = 1769 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 NTFRRSVVV 9 N RRS+VV Sbjct: 1665 NHLRRSIVV 1673>XP_005267916 Length = 920 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 TFRRSVV 8 +FRRSVV Sbjct: 746 SFRRSVV 752>XP_006712043 Length = 631 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 TFRRSVV 8 +FRRSVV Sbjct: 472 SFRRSVV 478>XP_006712042 Length = 717 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 TFRRSVV 8 +FRRSVV Sbjct: 558 SFRRSVV 564>XP_006712041 Length = 717 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 TFRRSVV 8 +FRRSVV Sbjct: 558 SFRRSVV 564>XP_005264295 Length = 786 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 TFRRSVV 8 +FRRSVV Sbjct: 627 SFRRSVV 633>XP_005264294 Length = 890 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 TFRRSVV 8 +FRRSVV Sbjct: 731 SFRRSVV 737>NP_009052 Length = 461 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 FRRSVV 8 FRRSVV Sbjct: 111 FRRSVV 116>NP_005968 Length = 685 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 NTFRRS 6 NTFRR+ Sbjct: 115 NTFRRT 120>NP_689417 Length = 711 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 NTFRRSV 7 N+FRR+V Sbjct: 306 NSFRRNV 312>NP_898865 Length = 685 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 NTFRRS 6 NTFRR+ Sbjct: 115 NTFRRT 120>NP_898864 Length = 685 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 NTFRRS 6 NTFRR+ Sbjct: 115 NTFRRT 120>NP_000520 Length = 297 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TFRRSVVV 9 T RR+VVV Sbjct: 143 TMRRTVVV 150>XP_006720248 Length = 711 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 NTFRRSV 7 N+FRR+V Sbjct: 306 NSFRRNV 312>XP_005267848 Length = 711 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 NTFRRSV 7 N+FRR+V Sbjct: 306 NSFRRNV 312>XP_006719917 Length = 142 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 NTFRRS 6 NTFRR+ Sbjct: 115 NTFRRT 120>XP_005266543 Length = 685 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 NTFRRS 6 NTFRR+ Sbjct: 115 NTFRRT 120>XP_005266542 Length = 685 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 NTFRRS 6 NTFRR+ Sbjct: 115 NTFRRT 120>NP_060413 Length = 711 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 NTFRRSV 7 N+FRR+V Sbjct: 306 NSFRRNV 312Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.336 0.137 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 384,863 Number of extensions: 613 Number of successful extensions: 46 Number of sequences better than 10000.0: 46 Number of HSP's gapped: 46 Number of HSP's successfully gapped: 46 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.4 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |