Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001268421 16 5631 NP_000170 16 5631 NP_001268422 16 5631 NP_001268423 16 5631 NP_001092908 16 5631 NP_001092907 16 5631 NP_919306 16 5631 XP_005264328 16 5631 NP_001191304 16 7355 NP_000899 16 7355 NP_001191305 16 7355 NP_060016 16 7355 NP_056079 16 7355 NP_001009880 16 7355 XP_006726900 16 7355 XP_006724474 16 7355 XP_005248366 16 7355 XP_006710184 16 7355 NP_036547 15 9605 NP_001192191 15 9605 NP_848638 15 9605 NP_056121 15 9605 NP_065933 15 9605 XP_005277842 15 9605 XP_005270747 15 9605 XP_006710574 15 9605 XP_005270746 15 9605>NP_001268421 Length = 1230 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TFEGVAVA 9 TF+G A+A Sbjct: 1091 TFDGTAIA 1098>NP_000170 Length = 1360 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TFEGVAVA 9 TF+G A+A Sbjct: 1221 TFDGTAIA 1228>NP_001268422 Length = 1058 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TFEGVAVA 9 TF+G A+A Sbjct: 919 TFDGTAIA 926>NP_001268423 Length = 1058 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TFEGVAVA 9 TF+G A+A Sbjct: 919 TFDGTAIA 926>NP_001092908 Length = 624 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TFEGVAVA 9 TFE VA+A Sbjct: 15 TFEDVAIA 22>NP_001092907 Length = 624 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TFEGVAVA 9 TFE VA+A Sbjct: 15 TFEDVAIA 22>NP_919306 Length = 623 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TFEGVAVA 9 TFE VA+A Sbjct: 15 TFEDVAIA 22>XP_005264328 Length = 1261 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TFEGVAVA 9 TF+G A+A Sbjct: 1122 TFDGTAIA 1129>NP_001191304 Length = 541 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 TFEGVA 7 TFEG+A Sbjct: 396 TFEGIA 401>NP_000899 Length = 540 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 TFEGVA 7 TFEG+A Sbjct: 396 TFEGIA 401>NP_001191305 Length = 324 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 TFEGVA 7 TFEG+A Sbjct: 180 TFEGIA 185>NP_060016 Length = 510 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 NTFEGVAVA 9 +TFEG++ A Sbjct: 83 STFEGLSTA 91>NP_056079 Length = 409 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 NTFEGV 6 NTF+GV Sbjct: 201 NTFQGV 206>NP_001009880 Length = 404 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 NTFEGV 6 NTF+GV Sbjct: 196 NTFQGV 201>XP_006726900 Length = 258 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NTFEGVAV 8 +TFEGV V Sbjct: 146 STFEGVHV 153>XP_006724474 Length = 278 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NTFEGVAV 8 +TFEGV V Sbjct: 146 STFEGVHV 153>XP_005248366 Length = 325 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 TFEGVA 7 TFEG+A Sbjct: 180 TFEGIA 185>XP_006710184 Length = 258 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NTFEGVAV 8 +TFEGV V Sbjct: 146 STFEGVHV 153>NP_036547 Length = 910 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 FEGVAV 8 FEGVA+ Sbjct: 44 FEGVAI 49>NP_001192191 Length = 117 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 FEGVAV 8 FEGVA+ Sbjct: 44 FEGVAI 49>NP_848638 Length = 458 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 TFEGVAV 8 T++GVAV Sbjct: 148 TYQGVAV 154>NP_056121 Length = 2620 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 1 NTFEGV 6 NTF+G+ Sbjct: 1800 NTFQGI 1805>NP_065933 Length = 1284 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 NTFEGVAV 8 NTF G+A+ Sbjct: 255 NTFTGLAL 262>XP_005277842 Length = 468 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 TFEGVAV 8 T++GVAV Sbjct: 221 TYQGVAV 227>XP_005270747 Length = 2025 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 1 NTFEGV 6 NTF+G+ Sbjct: 1205 NTFQGI 1210>XP_006710574 Length = 2445 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 1 NTFEGV 6 NTF+G+ Sbjct: 1625 NTFQGI 1630>XP_005270746 Length = 2443 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 1 NTFEGV 6 NTF+G+ Sbjct: 1625 NTFQGI 1630Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.315 0.127 0.343 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 515,258 Number of extensions: 1488 Number of successful extensions: 27 Number of sequences better than 10000.0: 27 Number of HSP's gapped: 27 Number of HSP's successfully gapped: 27 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |