Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001167558 21 175 NP_858045 21 175 NP_006525 21 175 NP_001167559 21 175 NP_071347 17 3301 XP_006713348 17 3301 NP_573439 17 4312 NP_573438 17 4312 NP_001181930 17 4312 NP_005695 17 4312 NP_115871 17 4312 XP_006722986 17 4312 XP_005259717 17 4312 XP_005259716 17 4312 XP_006710336 17 4312 XP_006710335 17 4312 XP_006710334 17 4312 XP_006710333 17 4312 XP_006710332 17 4312 NP_036441 16 5631 NP_573573 16 5631 XP_005277989 16 5631 XP_006718541 16 5631 XP_006718540 16 5631 XP_005277987 16 5631 NP_077017 16 5631 NP_006337 16 7355 XP_006719819 16 7355 NP_002309 15 9605 NP_542388 15 9605 NP_055950 15 9605 NP_055797 15 9605 XP_005267486 15 9605 XP_006720145 15 9605 XP_005267485 15 9605 XP_005267483 15 9605 XP_005267482 15 9605 XP_005267481 15 9605 XP_005267480 15 9605 XP_005267479 15 9605 XP_005267478 15 9605 XP_005267477 15 9605 XP_005250292 15 9605>NP_001167558 Length = 1423 Score = 21.2 bits (43), Expect = 175 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 NSMINQMNQ 9 NSM+NQMNQ Sbjct: 1136 NSMMNQMNQ 1144>NP_858045 Length = 1424 Score = 21.2 bits (43), Expect = 175 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 NSMINQMNQ 9 NSM+NQMNQ Sbjct: 1136 NSMMNQMNQ 1144>NP_006525 Length = 1420 Score = 21.2 bits (43), Expect = 175 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 NSMINQMNQ 9 NSM+NQMNQ Sbjct: 1136 NSMMNQMNQ 1144>NP_001167559 Length = 1415 Score = 21.2 bits (43), Expect = 175 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 NSMINQMNQ 9 NSM+NQMNQ Sbjct: 1131 NSMMNQMNQ 1139>NP_071347 Length = 1314 Score = 16.9 bits (32), Expect = 3301 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 NSMINQMN 8 NS++NQ+N Sbjct: 1031 NSVLNQLN 1038>XP_006713348 Length = 1314 Score = 16.9 bits (32), Expect = 3301 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 NSMINQMN 8 NS++NQ+N Sbjct: 1031 NSVLNQLN 1038>NP_573439 Length = 1436 Score = 16.5 bits (31), Expect = 4312 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 MINQMNQ 9 M+NQ+NQ Sbjct: 1265 MLNQLNQ 1271>NP_573438 Length = 1440 Score = 16.5 bits (31), Expect = 4312 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 MINQMNQ 9 M+NQ+NQ Sbjct: 1271 MLNQLNQ 1277>NP_001181930 Length = 1433 Score = 16.5 bits (31), Expect = 4312 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 MINQMNQ 9 M+NQ+NQ Sbjct: 1262 MLNQLNQ 1268>NP_005695 Length = 1446 Score = 16.5 bits (31), Expect = 4312 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 MINQMNQ 9 M+NQ+NQ Sbjct: 1275 MLNQLNQ 1281>NP_115871 Length = 1537 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 NSMINQMNQ 9 NSM++ +NQ Sbjct: 1128 NSMVSNINQ 1136>XP_006722986 Length = 1519 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 NSMINQMNQ 9 NSM++ +NQ Sbjct: 909 NSMVSNINQ 917>XP_005259717 Length = 1738 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 NSMINQMNQ 9 NSM++ +NQ Sbjct: 1128 NSMVSNINQ 1136>XP_005259716 Length = 1738 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 NSMINQMNQ 9 NSM++ +NQ Sbjct: 1128 NSMVSNINQ 1136>XP_006710336 Length = 1177 Score = 16.5 bits (31), Expect = 4312 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 MINQMNQ 9 M+NQ+NQ Sbjct: 1006 MLNQLNQ 1012>XP_006710335 Length = 1370 Score = 16.5 bits (31), Expect = 4312 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 MINQMNQ 9 M+NQ+NQ Sbjct: 1199 MLNQLNQ 1205>XP_006710334 Length = 1292 Score = 16.5 bits (31), Expect = 4312 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 MINQMNQ 9 M+NQ+NQ Sbjct: 1121 MLNQLNQ 1127>XP_006710333 Length = 1439 Score = 16.5 bits (31), Expect = 4312 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 MINQMNQ 9 M+NQ+NQ Sbjct: 1268 MLNQLNQ 1274>XP_006710332 Length = 1442 Score = 16.5 bits (31), Expect = 4312 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 MINQMNQ 9 M+NQ+NQ Sbjct: 1271 MLNQLNQ 1277>NP_036441 Length = 1849 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 NSMINQMNQ 9 NS++ QMN+ Sbjct: 1628 NSILQQMNR 1636>NP_573573 Length = 1261 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 NSMINQMNQ 9 NS++ QMN+ Sbjct: 1040 NSILQQMNR 1048>XP_005277989 Length = 1470 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 NSMINQMNQ 9 NS++ QMN+ Sbjct: 1249 NSILQQMNR 1257>XP_006718541 Length = 1839 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 NSMINQMNQ 9 NS++ QMN+ Sbjct: 1618 NSILQQMNR 1626>XP_006718540 Length = 1842 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 NSMINQMNQ 9 NS++ QMN+ Sbjct: 1621 NSILQQMNR 1629>XP_005277987 Length = 1849 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 NSMINQMNQ 9 NS++ QMN+ Sbjct: 1628 NSILQQMNR 1636>NP_077017 Length = 83 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 NSMINQMN 8 NSM++Q+N Sbjct: 32 NSMLDQIN 39>NP_006337 Length = 757 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 NSMINQMNQ 9 NS++NQ Q Sbjct: 616 NSLLNQTQQ 624>XP_006719819 Length = 332 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 NSMINQMNQ 9 NS++NQ Q Sbjct: 191 NSLLNQTQQ 199>NP_002309 Length = 774 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 NSMINQM 7 NS+INQ+ Sbjct: 170 NSLINQI 176>NP_542388 Length = 361 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 NSMINQMN 8 NS+IN+ N Sbjct: 221 NSVINRFN 228>NP_055950 Length = 2012 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 SMINQMN 8 SM+NQM+ Sbjct: 1108 SMLNQMS 1114>NP_055797 Length = 2341 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 SMINQM 7 SM+NQM Sbjct: 2170 SMVNQM 2175>XP_005267486 Length = 1421 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 SMINQM 7 SM+NQM Sbjct: 1250 SMVNQM 1255>XP_006720145 Length = 1423 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 SMINQM 7 SM+NQM Sbjct: 1252 SMVNQM 1257>XP_005267485 Length = 1459 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 SMINQM 7 SM+NQM Sbjct: 1288 SMVNQM 1293>XP_005267483 Length = 2230 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 SMINQM 7 SM+NQM Sbjct: 2059 SMVNQM 2064>XP_005267482 Length = 2243 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 SMINQM 7 SM+NQM Sbjct: 2072 SMVNQM 2077>XP_005267481 Length = 2293 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 SMINQM 7 SM+NQM Sbjct: 2122 SMVNQM 2127>XP_005267480 Length = 2336 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 SMINQM 7 SM+NQM Sbjct: 2165 SMVNQM 2170>XP_005267479 Length = 2344 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 SMINQM 7 SM+NQM Sbjct: 2173 SMVNQM 2178>XP_005267478 Length = 2348 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 SMINQM 7 SM+NQM Sbjct: 2177 SMVNQM 2182>XP_005267477 Length = 2349 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 SMINQM 7 SM+NQM Sbjct: 2178 SMVNQM 2183>XP_005250292 Length = 1654 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 SMINQMN 8 SM+NQM+ Sbjct: 750 SMLNQMS 756Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.306 0.110 0.272 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 287,348 Number of extensions: 458 Number of successful extensions: 43 Number of sequences better than 10000.0: 43 Number of HSP's gapped: 43 Number of HSP's successfully gapped: 43 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.6 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |