Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_002515 20 390 NP_057215 17 4312 NP_001438 17 4312 XP_006714824 17 4312 NP_001248315 16 5631 NP_001248311 16 5631 NP_001248313 16 5631 NP_001035787 16 5631 NP_060784 16 5631 NP_596870 16 5631 NP_001248312 16 5631 NP_001248314 16 5631 XP_005253058 16 5631 NP_689706 16 7355 XP_005270565 16 7355 XP_005270564 16 7355 NP_689914 15 9605 NP_001020029 15 9605 NP_055637 15 9605 NP_000338 15 9605 XP_005258567 15 9605 XP_006720304 15 9605 XP_005268080 15 9605 XP_005263436 15 9605 XP_005263435 15 9605 NP_055679 15 9605 NP_789780 15 9605 NP_940900 15 9605>NP_002515 Length = 189 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 NSKSFANIN 9 NSKSFA+IN Sbjct: 86 NSKSFADIN 94>NP_057215 Length = 200 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 NSKSFANIN 9 N KSF NI+ Sbjct: 93 NGKSFENIS 101>NP_001438 Length = 4349 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 NSKSFANIN 9 NS+ F NIN Sbjct: 1598 NSEGFFNIN 1606>XP_006714824 Length = 4349 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 NSKSFANIN 9 NS+ F NIN Sbjct: 1598 NSEGFFNIN 1606>NP_001248315 Length = 199 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 NSKSFAN 7 NSKS+AN Sbjct: 70 NSKSWAN 76>NP_001248311 Length = 449 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 NSKSFAN 7 NSKS+AN Sbjct: 148 NSKSWAN 154>NP_001248313 Length = 341 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 NSKSFAN 7 NSKS+AN Sbjct: 40 NSKSWAN 46>NP_001035787 Length = 471 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 NSKSFAN 7 NSKS+AN Sbjct: 170 NSKSWAN 176>NP_060784 Length = 379 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 NSKSFAN 7 NSKS+AN Sbjct: 170 NSKSWAN 176>NP_596870 Length = 5604 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SKSFANIN 9 +KSFAN++ Sbjct: 5264 AKSFANVD 5271>NP_001248312 Length = 357 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 NSKSFAN 7 NSKS+AN Sbjct: 148 NSKSWAN 154>NP_001248314 Length = 341 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 NSKSFAN 7 NSKS+AN Sbjct: 132 NSKSWAN 138>XP_005253058 Length = 215 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 NSKSFAN 7 NSKS+AN Sbjct: 170 NSKSWAN 176>NP_689706 Length = 420 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 SKSFAN 7 SKSFAN Sbjct: 261 SKSFAN 266>XP_005270565 Length = 407 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 SKSFAN 7 SKSFAN Sbjct: 248 SKSFAN 253>XP_005270564 Length = 407 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 SKSFAN 7 SKSFAN Sbjct: 248 SKSFAN 253>NP_689914 Length = 5058 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 NSKSFANI 8 N+K+F NI Sbjct: 5008 NNKTFLNI 5015>NP_001020029 Length = 2328 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 NSKSFAN 7 NS+ FAN Sbjct: 326 NSRKFAN 332>NP_055637 Length = 1032 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 NSKSFANIN 9 N SFA+IN Sbjct: 945 NVPSFAHIN 953>NP_000338 Length = 2137 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 NSKSFAN 7 NS+ FAN Sbjct: 326 NSRKFAN 332>XP_005258567 Length = 1036 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 NSKSFANIN 9 +SKS N+N Sbjct: 1006 SSKSLVNLN 1014>XP_006720304 Length = 2328 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 NSKSFAN 7 NS+ FAN Sbjct: 326 NSRKFAN 332>XP_005268080 Length = 2328 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 NSKSFAN 7 NS+ FAN Sbjct: 326 NSRKFAN 332>XP_005263436 Length = 1033 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 NSKSFANIN 9 N SFA+IN Sbjct: 946 NVPSFAHIN 954>XP_005263435 Length = 1033 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 NSKSFANIN 9 N SFA+IN Sbjct: 946 NVPSFAHIN 954>NP_055679 Length = 409 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 NSKSFAN 7 N+KSF N Sbjct: 310 NAKSFGN 316>NP_789780 Length = 1043 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 NSKSFANIN 9 +SKS N+N Sbjct: 1006 SSKSLVNLN 1014>NP_940900 Length = 236 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 NSKSFAN 7 NSK F+N Sbjct: 25 NSKQFSN 31Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.301 0.113 0.286 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 385,076 Number of extensions: 548 Number of successful extensions: 28 Number of sequences better than 10000.0: 28 Number of HSP's gapped: 28 Number of HSP's successfully gapped: 28 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.3 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |