Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001167558 20 509 NP_858045 20 509 NP_006525 20 509 NP_001167559 20 509 NP_000048 18 1482 NP_001274177 18 1482 NP_001274176 18 1482 NP_001274175 18 1482 XP_006720695 18 1482 NP_110379 17 3301 NP_001008897 17 3301 NP_996816 16 5631 NP_003150 16 7355 NP_001032420 16 7355 NP_060177 16 7355 XP_005274642 16 7355 XP_005274641 16 7355 XP_006724574 16 7355 XP_005245991 16 7355 NP_001137250 16 7355 NP_000089 15 9605 NP_001094383 15 9605 NP_056012 15 9605 NP_001269889 15 9605 NP_001269888 15 9605 NP_060707 15 9605 NP_004570 15 9605 NP_001230056 15 9605 NP_055532 15 9605 NP_055501 15 9605 NP_008988 15 9605 NP_001005413 15 9605 NP_127490 15 9605 XP_006723575 15 9605 XP_005259502 15 9605 XP_005259501 15 9605 XP_006720155 15 9605 XP_006720154 15 9605 XP_006720153 15 9605 XP_006720152 15 9605 XP_006720151 15 9605 XP_006720150 15 9605 XP_005267520 15 9605 XP_006720149 15 9605 XP_005267519 15 9605 XP_006720148 15 9605 XP_006718714 15 9605 XP_005274200 15 9605 XP_006718713 15 9605 XP_005274199 15 9605 XP_005269520 15 9605 XP_005270541 15 9605>NP_001167558 Length = 1423 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NSKAGIMEP 9 NSKAG MEP Sbjct: 924 NSKAGRMEP 932>NP_858045 Length = 1424 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NSKAGIMEP 9 NSKAG MEP Sbjct: 924 NSKAGRMEP 932>NP_006525 Length = 1420 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NSKAGIMEP 9 NSKAG MEP Sbjct: 924 NSKAGRMEP 932>NP_001167559 Length = 1415 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NSKAGIMEP 9 NSKAG MEP Sbjct: 919 NSKAGRMEP 927>NP_000048 Length = 1417 Score = 18.1 bits (35), Expect = 1482 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 NSKAGIMEP 9 NSK GIM P Sbjct: 1393 NSKLGIMAP 1401>NP_001274177 Length = 1042 Score = 18.1 bits (35), Expect = 1482 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 NSKAGIMEP 9 NSK GIM P Sbjct: 1018 NSKLGIMAP 1026>NP_001274176 Length = 1286 Score = 18.1 bits (35), Expect = 1482 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 NSKAGIMEP 9 NSK GIM P Sbjct: 1262 NSKLGIMAP 1270>NP_001274175 Length = 1417 Score = 18.1 bits (35), Expect = 1482 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 NSKAGIMEP 9 NSK GIM P Sbjct: 1393 NSKLGIMAP 1401>XP_006720695 Length = 763 Score = 18.1 bits (35), Expect = 1482 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 NSKAGIMEP 9 NSK GIM P Sbjct: 739 NSKLGIMAP 747>NP_110379 Length = 556 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 NSKAGIMEP 9 N +AG+ EP Sbjct: 498 NKQAGVFEP 506>NP_001008897 Length = 401 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 NSKAGIMEP 9 N +AG+ EP Sbjct: 343 NKQAGVFEP 351>NP_996816 Length = 5202 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 NSKAGIMEP 9 NS+ GI+ P Sbjct: 4513 NSQGGILSP 4521>NP_003150 Length = 1030 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SKAGIMEP 9 SKAG ++P Sbjct: 453 SKAGTLQP 460>NP_001032420 Length = 1030 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SKAGIMEP 9 SKAG ++P Sbjct: 453 SKAGTLQP 460>NP_060177 Length = 903 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 NSKAGIMEP 9 NS+ G+ EP Sbjct: 817 NSEEGLREP 825>XP_005274642 Length = 984 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SKAGIMEP 9 SKAG ++P Sbjct: 436 SKAGTLQP 443>XP_005274641 Length = 1001 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SKAGIMEP 9 SKAG ++P Sbjct: 453 SKAGTLQP 460>XP_006724574 Length = 1030 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SKAGIMEP 9 SKAG ++P Sbjct: 453 SKAGTLQP 460>XP_005245991 Length = 905 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 NSKAGIMEP 9 NS+ G+ EP Sbjct: 819 NSEEGLREP 827>NP_001137250 Length = 894 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 NSKAGIMEP 9 NS+ G+ EP Sbjct: 808 NSEEGLREP 816>NP_000089 Length = 658 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 KAGIMEP 9 +AG++EP Sbjct: 167 RAGLLEP 173>NP_001094383 Length = 904 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 KAGIMEP 9 K GI+EP Sbjct: 695 KVGIVEP 701>NP_056012 Length = 889 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 KAGIMEP 9 K GI+EP Sbjct: 680 KVGIVEP 686>NP_001269889 Length = 1135 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 KAGIMEP 9 KAG+++P Sbjct: 260 KAGLLQP 266>NP_001269888 Length = 1135 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 KAGIMEP 9 KAG+++P Sbjct: 260 KAGLLQP 266>NP_060707 Length = 1150 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 KAGIMEP 9 KAG+++P Sbjct: 275 KAGLLQP 281>NP_004570 Length = 820 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SKAGIMEP 9 S AG++EP Sbjct: 646 SPAGMLEP 653>NP_001230056 Length = 814 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 KAGIMEP 9 K GI+EP Sbjct: 605 KVGIVEP 611>NP_055532 Length = 1300 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 KAGIMEP 9 KAG+ EP Sbjct: 443 KAGLSEP 449>NP_055501 Length = 1070 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 KAGIMEP 9 KAG M+P Sbjct: 683 KAGAMQP 689>NP_008988 Length = 277 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 AGIMEP 9 AGI+EP Sbjct: 20 AGILEP 25>NP_001005413 Length = 230 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 AGIMEP 9 AGI+EP Sbjct: 20 AGILEP 25>NP_127490 Length = 277 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 AGIMEP 9 AGI+EP Sbjct: 20 AGILEP 25>XP_006723575 Length = 1302 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 KAGIMEP 9 KAG+ EP Sbjct: 443 KAGLSEP 449>XP_005259502 Length = 1313 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 KAGIMEP 9 KAG+ EP Sbjct: 456 KAGLSEP 462>XP_005259501 Length = 1070 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 KAGIMEP 9 KAG M+P Sbjct: 683 KAGAMQP 689>XP_006720155 Length = 881 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 KAGIMEP 9 K GI+EP Sbjct: 672 KVGIVEP 678>XP_006720154 Length = 894 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 KAGIMEP 9 K GI+EP Sbjct: 685 KVGIVEP 691>XP_006720153 Length = 905 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 KAGIMEP 9 K GI+EP Sbjct: 696 KVGIVEP 702>XP_006720152 Length = 911 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 KAGIMEP 9 K GI+EP Sbjct: 681 KVGIVEP 687>XP_006720151 Length = 915 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 KAGIMEP 9 K GI+EP Sbjct: 685 KVGIVEP 691>XP_006720150 Length = 918 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 KAGIMEP 9 K GI+EP Sbjct: 688 KVGIVEP 694>XP_005267520 Length = 921 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 KAGIMEP 9 K GI+EP Sbjct: 691 KVGIVEP 697>XP_006720149 Length = 922 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 KAGIMEP 9 K GI+EP Sbjct: 692 KVGIVEP 698>XP_005267519 Length = 925 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 KAGIMEP 9 K GI+EP Sbjct: 695 KVGIVEP 701>XP_006720148 Length = 926 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 KAGIMEP 9 K GI+EP Sbjct: 696 KVGIVEP 702>XP_006718714 Length = 637 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SKAGIMEP 9 S AG++EP Sbjct: 463 SPAGMLEP 470>XP_005274200 Length = 816 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SKAGIMEP 9 S AG++EP Sbjct: 642 SPAGMLEP 649>XP_006718713 Length = 837 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SKAGIMEP 9 S AG++EP Sbjct: 686 SPAGMLEP 693>XP_005274199 Length = 860 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SKAGIMEP 9 S AG++EP Sbjct: 686 SPAGMLEP 693>XP_005269520 Length = 277 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 AGIMEP 9 AGI+EP Sbjct: 20 AGILEP 25>XP_005270541 Length = 635 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 KAGIMEP 9 +AG++EP Sbjct: 167 RAGLLEP 173Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.301 0.122 0.331 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 482,578 Number of extensions: 843 Number of successful extensions: 52 Number of sequences better than 10000.0: 52 Number of HSP's gapped: 52 Number of HSP's successfully gapped: 52 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.2 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |