Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001245210 20 299 NP_000242 20 299 XP_005264389 20 299 NP_060918 18 1482 NP_001182121 17 2528 NP_689560 17 2528 NP_001361 17 3301 XP_006712019 17 3301 NP_002026 16 5631 NP_945314 16 5631 NP_001231191 16 5631 XP_005266734 16 5631 XP_006722496 16 5631 XP_005250324 16 5631 XP_005250323 16 5631 NP_036389 16 5631 NP_001264156 16 7355 NP_003658 16 7355 NP_001264155 16 7355 NP_001273005 16 7355 NP_612504 16 7355 NP_002937 16 7355 NP_065776 16 7355 XP_005269261 16 7355 XP_006715966 16 7355 XP_005250277 16 7355 XP_006715965 16 7355 XP_005250276 16 7355 XP_006715964 16 7355 XP_006715963 16 7355 XP_005246022 16 7355 NP_055020 16 7355 NP_001138498 15 9605 NP_997320 15 9605 NP_055506 15 9605 NP_113628 15 9605 XP_005253612 15 9605>NP_001245210 Length = 868 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 NQLPNVIKA 9 NQLPNVI+A Sbjct: 346 NQLPNVIQA 354>NP_000242 Length = 934 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 NQLPNVIKA 9 NQLPNVI+A Sbjct: 412 NQLPNVIQA 420>XP_005264389 Length = 921 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 NQLPNVIKA 9 NQLPNVI+A Sbjct: 412 NQLPNVIQA 420>NP_060918 Length = 1230 Score = 18.1 bits (35), Expect = 1482 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 NQLPNVIKA 9 +Q+PN++KA Sbjct: 430 SQVPNIVKA 438>NP_001182121 Length = 784 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 NQLPNVIKA 9 N LP VIKA Sbjct: 431 NALPGVIKA 439>NP_689560 Length = 973 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 NQLPNVIKA 9 N LP VIKA Sbjct: 527 NALPGVIKA 535>NP_001361 Length = 4158 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 NQLPNVIKA 9 N+LPN ++A Sbjct: 1146 NRLPNALRA 1154>XP_006712019 Length = 4158 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 NQLPNVIKA 9 N+LPN ++A Sbjct: 1146 NRLPNALRA 1154>NP_002026 Length = 332 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NQLPNVIK 8 NQ+ NVIK Sbjct: 99 NQVENVIK 106>NP_945314 Length = 1386 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 NQLPNVIKA 9 NQ+P V KA Sbjct: 466 NQIPEVEKA 474>NP_001231191 Length = 524 Score = 16.2 bits (30), Expect = 5631 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 NQLPNVIK 8 NQ+PN ++ Sbjct: 18 NQMPNAVQ 25>XP_005266734 Length = 298 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NQLPNVIK 8 NQ+ NVIK Sbjct: 99 NQVENVIK 106>XP_006722496 Length = 303 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NQLPNVIK 8 NQ+ NVIK Sbjct: 70 NQVENVIK 77>XP_005250324 Length = 514 Score = 16.2 bits (30), Expect = 5631 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 NQLPNVIK 8 NQ+PN ++ Sbjct: 8 NQMPNAVQ 15>XP_005250323 Length = 514 Score = 16.2 bits (30), Expect = 5631 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 NQLPNVIK 8 NQ+PN ++ Sbjct: 8 NQMPNAVQ 15>NP_036389 Length = 514 Score = 16.2 bits (30), Expect = 5631 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 NQLPNVIK 8 NQ+PN ++ Sbjct: 8 NQMPNAVQ 15>NP_001264156 Length = 835 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 NQLPNV 6 NQLPN+ Sbjct: 277 NQLPNL 282>NP_003658 Length = 907 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 NQLPNV 6 NQLPN+ Sbjct: 349 NQLPNL 354>NP_001264155 Length = 883 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 NQLPNV 6 NQLPN+ Sbjct: 325 NQLPNL 330>NP_001273005 Length = 174 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 NQLPNVIKA 9 NQ+ N+IKA Sbjct: 114 NQVLNLIKA 122>NP_612504 Length = 738 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 QLPNVIKA 9 ++PN++KA Sbjct: 79 KIPNLVKA 86>NP_002937 Length = 270 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 NQLPNVIKA 9 NQ+ N+IKA Sbjct: 210 NQVLNLIKA 218>NP_065776 Length = 861 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 QLPNVIKA 9 ++PN++KA Sbjct: 203 KIPNLVKA 210>XP_005269261 Length = 833 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 NQLPNV 6 NQLPN+ Sbjct: 275 NQLPNL 280>XP_006715966 Length = 856 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 QLPNVIKA 9 ++PN++KA Sbjct: 203 KIPNLVKA 210>XP_005250277 Length = 862 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 QLPNVIKA 9 ++PN++KA Sbjct: 203 KIPNLVKA 210>XP_006715965 Length = 872 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 QLPNVIKA 9 ++PN++KA Sbjct: 203 KIPNLVKA 210>XP_005250276 Length = 873 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 QLPNVIKA 9 ++PN++KA Sbjct: 203 KIPNLVKA 210>XP_006715964 Length = 964 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 QLPNVIKA 9 ++PN++KA Sbjct: 203 KIPNLVKA 210>XP_006715963 Length = 975 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 QLPNVIKA 9 ++PN++KA Sbjct: 203 KIPNLVKA 210>XP_005246022 Length = 278 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 NQLPNVIKA 9 NQ+ N+IKA Sbjct: 218 NQVLNLIKA 226>NP_055020 Length = 403 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 QLPNVIKA 9 QLPNV+ A Sbjct: 214 QLPNVLFA 221>NP_001138498 Length = 2299 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 NQLPNVIK 8 NQ NV+K Sbjct: 1325 NQFSNVVK 1332>NP_997320 Length = 4471 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 NQLPNVIK 8 NQ+PN ++ Sbjct: 2266 NQIPNKVE 2273>NP_055506 Length = 1485 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NQLPNVIK 8 +QLP VIK Sbjct: 1098 HQLPPVIK 1105>NP_113628 Length = 232 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 LPNVIK 8 LPNV+K Sbjct: 34 LPNVLK 39>XP_005253612 Length = 4589 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 NQLPNVIK 8 NQ+PN ++ Sbjct: 2384 NQIPNKVE 2391Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.311 0.129 0.351 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 720,106 Number of extensions: 1022 Number of successful extensions: 37 Number of sequences better than 10000.0: 37 Number of HSP's gapped: 37 Number of HSP's successfully gapped: 37 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |