Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001155973 19 665 NP_001020014 19 665 NP_055903 19 665 NP_001269516 17 2528 NP_004276 17 2528 XP_006711115 17 2528 XP_005263598 17 2528 XP_005263597 17 2528 XP_005263596 17 2528 NP_001269621 16 5631 NP_996879 16 7355 NP_001363 16 7355 NP_079420 16 7355 NP_001095876 16 7355 XP_006721530 16 7355 XP_006721529 16 7355 XP_006721528 16 7355 XP_006714389 16 7355 XP_005263303 16 7355 XP_005263302 16 7355 XP_006710493 16 7355 XP_006710490 16 7355 XP_006710489 16 7355>NP_001155973 Length = 1833 Score = 19.2 bits (38), Expect = 665 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 NNAKRVAV 8 NNAKRVAV Sbjct: 68 NNAKRVAV 75>NP_001020014 Length = 1029 Score = 19.2 bits (38), Expect = 665 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 NNAKRVAV 8 NNAKRVAV Sbjct: 104 NNAKRVAV 111>NP_055903 Length = 1723 Score = 19.2 bits (38), Expect = 665 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 NNAKRVAV 8 NNAKRVAV Sbjct: 68 NNAKRVAV 75>NP_001269516 Length = 802 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 NNAKRVAVL 9 N AK+VAVL Sbjct: 748 NRAKKVAVL 756>NP_004276 Length = 791 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 NNAKRVAVL 9 N AK+VAVL Sbjct: 737 NRAKKVAVL 745>XP_006711115 Length = 791 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 NNAKRVAVL 9 N AK+VAVL Sbjct: 737 NRAKKVAVL 745>XP_005263598 Length = 798 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 NNAKRVAVL 9 N AK+VAVL Sbjct: 744 NRAKKVAVL 752>XP_005263597 Length = 800 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 NNAKRVAVL 9 N AK+VAVL Sbjct: 746 NRAKKVAVL 754>XP_005263596 Length = 802 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 NNAKRVAVL 9 N AK+VAVL Sbjct: 748 NRAKKVAVL 756>NP_001269621 Length = 536 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 NNAKRVAVL 9 N AKRVA++ Sbjct: 4 NMAKRVAIV 12>NP_996879 Length = 2223 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 NNAKRVAVL 9 NN KR+A + Sbjct: 570 NNTKRLATI 578>NP_001363 Length = 4486 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 NNAKRVAV 8 NN K+VA+ Sbjct: 1199 NNIKKVAI 1206>NP_079420 Length = 1244 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 NNAKRVAVL 9 NN K VAVL Sbjct: 2 NNQKVVAVL 10>NP_001095876 Length = 1244 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 NNAKRVAVL 9 NN K VAVL Sbjct: 2 NNQKVVAVL 10>XP_006721530 Length = 2746 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 NNAKRVAV 8 NN K+VA+ Sbjct: 1199 NNIKKVAI 1206>XP_006721529 Length = 2817 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 NNAKRVAV 8 NN K+VA+ Sbjct: 1199 NNIKKVAI 1206>XP_006721528 Length = 3869 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 NNAKRVAV 8 NN K+VA+ Sbjct: 1199 NNIKKVAI 1206>XP_006714389 Length = 1225 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 NNAKRVAVL 9 NN K VAVL Sbjct: 2 NNQKVVAVL 10>XP_005263303 Length = 1245 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 NNAKRVAVL 9 NN K VAVL Sbjct: 2 NNQKVVAVL 10>XP_005263302 Length = 1245 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 NNAKRVAVL 9 NN K VAVL Sbjct: 2 NNQKVVAVL 10>XP_006710493 Length = 1305 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 NNAKRVAVL 9 NN KR+A + Sbjct: 570 NNTKRLATI 578>XP_006710490 Length = 2158 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 NNAKRVAVL 9 NN KR+A + Sbjct: 505 NNTKRLATI 513>XP_006710489 Length = 2185 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 NNAKRVAVL 9 NN KR+A + Sbjct: 570 NNTKRLATI 578Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.317 0.124 0.308 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 308,089 Number of extensions: 407 Number of successful extensions: 23 Number of sequences better than 10000.0: 23 Number of HSP's gapped: 23 Number of HSP's successfully gapped: 23 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.8 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |