Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005742 17 2528 NP_671714 17 2528 XP_005250160 17 2528 XP_005250159 17 2528 NP_055660 16 7355 NP_078789 16 7355 XP_006715685 16 7355 XP_005265541 16 7355 XP_006713398 16 7355 XP_006713397 16 7355 XP_006713396 16 7355 NP_055877 15 9605 NP_001275656 15 9605 NP_689805 15 9605 NP_001275657 15 9605 NP_004125 15 9605 NP_001164120 15 9605 NP_001164121 15 9605 NP_112483 15 9605 NP_001013725 15 9605 NP_803882 15 9605 NP_006860 15 9605 NP_001271240 15 9605 NP_001271239 15 9605 NP_001271238 15 9605 NP_001271237 15 9605 NP_619636 15 9605 XP_005262363 15 9605 XP_005262362 15 9605 XP_005262361 15 9605 XP_005262360 15 9605 XP_005262358 15 9605 XP_005254450 15 9605 XP_005254449 15 9605 XP_006720129 15 9605 XP_006720128 15 9605 XP_006720126 15 9605 XP_005267433 15 9605 XP_005267434 15 9605 XP_006717794 15 9605 XP_005269715 15 9605 XP_006717793 15 9605 XP_005269713 15 9605 XP_005246758 15 9605 XP_005246757 15 9605 XP_005246756 15 9605 XP_005246755 15 9605 XP_006712707 15 9605 NP_001010893 15 9605>NP_005742 Length = 3907 Score = 17.3 bits (33), Expect = 2528 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 NLVSERE 7 NLVSERE Sbjct: 1647 NLVSERE 1653>NP_671714 Length = 3899 Score = 17.3 bits (33), Expect = 2528 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 NLVSERE 7 NLVSERE Sbjct: 1647 NLVSERE 1653>XP_005250160 Length = 3939 Score = 17.3 bits (33), Expect = 2528 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 NLVSERE 7 NLVSERE Sbjct: 1647 NLVSERE 1653>XP_005250159 Length = 3952 Score = 17.3 bits (33), Expect = 2528 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 NLVSERE 7 NLVSERE Sbjct: 1647 NLVSERE 1653>NP_055660 Length = 907 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 NLVSERE 7 NLV ERE Sbjct: 376 NLVKERE 382>NP_078789 Length = 1478 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 SEREGA 9 SEREGA Sbjct: 849 SEREGA 854>XP_006715685 Length = 761 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 NLVSERE 7 NLV ERE Sbjct: 230 NLVKERE 236>XP_005265541 Length = 1080 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 SEREGA 9 SEREGA Sbjct: 849 SEREGA 854>XP_006713398 Length = 1478 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 SEREGA 9 SEREGA Sbjct: 849 SEREGA 854>XP_006713397 Length = 1478 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 SEREGA 9 SEREGA Sbjct: 849 SEREGA 854>XP_006713396 Length = 1478 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 SEREGA 9 SEREGA Sbjct: 849 SEREGA 854>NP_055877 Length = 1664 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LVSEREGA 9 LVS REG+ Sbjct: 155 LVSPREGS 162>NP_001275656 Length = 1400 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LVSEREGA 9 LVS REG+ Sbjct: 155 LVSPREGS 162>NP_689805 Length = 975 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 NLVSEREGA 9 NL+ E EG+ Sbjct: 794 NLLQEEEGS 802>NP_001275657 Length = 1542 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LVSEREGA 9 LVS REG+ Sbjct: 35 LVSPREGS 42>NP_004125 Length = 679 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LVSEREGA 9 + SEREG+ Sbjct: 655 MASEREGS 662>NP_001164120 Length = 717 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 NLVSERE 7 NL+SER+ Sbjct: 124 NLISERK 130>NP_001164121 Length = 675 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 NLVSERE 7 NL+SER+ Sbjct: 82 NLISERK 88>NP_112483 Length = 734 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 NLVSERE 7 NL+SER+ Sbjct: 124 NLISERK 130>NP_001013725 Length = 1649 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LVSEREGA 9 LVS++EG+ Sbjct: 1453 LVSDKEGS 1460>NP_803882 Length = 462 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 NLVSEREG 8 N++ ER+G Sbjct: 237 NIIKERKG 244>NP_006860 Length = 374 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LVSEREGA 9 +++EREGA Sbjct: 152 VLTEREGA 159>NP_001271240 Length = 279 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LVSEREGA 9 +++EREGA Sbjct: 57 VLTEREGA 64>NP_001271239 Length = 302 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LVSEREGA 9 +++EREGA Sbjct: 80 VLTEREGA 87>NP_001271238 Length = 302 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LVSEREGA 9 +++EREGA Sbjct: 80 VLTEREGA 87>NP_001271237 Length = 385 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LVSEREGA 9 +++EREGA Sbjct: 163 VLTEREGA 170>NP_619636 Length = 760 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 VSEREGA 9 VSE EGA Sbjct: 127 VSENEGA 133>XP_005262363 Length = 489 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 NLVSERE 7 NL+SER+ Sbjct: 124 NLISERK 130>XP_005262362 Length = 490 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 NLVSERE 7 NL+SER+ Sbjct: 124 NLISERK 130>XP_005262361 Length = 536 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 NLVSERE 7 NL+SER+ Sbjct: 124 NLISERK 130>XP_005262360 Length = 557 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 NLVSERE 7 NL+SER+ Sbjct: 124 NLISERK 130>XP_005262358 Length = 733 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 NLVSERE 7 NL+SER+ Sbjct: 124 NLISERK 130>XP_005254450 Length = 1505 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LVSEREGA 9 LVS++EG+ Sbjct: 1453 LVSDKEGS 1460>XP_005254449 Length = 1626 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LVSEREGA 9 LVS++EG+ Sbjct: 1453 LVSDKEGS 1460>XP_006720129 Length = 587 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 NLVSEREGA 9 NL+ E EG+ Sbjct: 406 NLLQEEEGS 414>XP_006720128 Length = 934 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 NLVSEREGA 9 NL+ E EG+ Sbjct: 794 NLLQEEEGS 802>XP_006720126 Length = 975 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 NLVSEREGA 9 NL+ E EG+ Sbjct: 794 NLLQEEEGS 802>XP_005267433 Length = 975 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 NLVSEREGA 9 NL+ E EG+ Sbjct: 794 NLLQEEEGS 802>XP_005267434 Length = 975 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 NLVSEREGA 9 NL+ E EG+ Sbjct: 794 NLLQEEEGS 802>XP_006717794 Length = 1194 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LVSEREGA 9 LVS REG+ Sbjct: 155 LVSPREGS 162>XP_005269715 Length = 1230 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LVSEREGA 9 LVS REG+ Sbjct: 155 LVSPREGS 162>XP_006717793 Length = 1603 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LVSEREGA 9 LVS REG+ Sbjct: 155 LVSPREGS 162>XP_005269713 Length = 1646 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LVSEREGA 9 LVS REG+ Sbjct: 155 LVSPREGS 162>XP_005246758 Length = 234 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 NLVSEREG 8 N++ ER+G Sbjct: 9 NIIKERKG 16>XP_005246757 Length = 234 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 NLVSEREG 8 N++ ER+G Sbjct: 9 NIIKERKG 16>XP_005246756 Length = 360 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 NLVSEREG 8 N++ ER+G Sbjct: 135 NIIKERKG 142>XP_005246755 Length = 360 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 NLVSEREG 8 N++ ER+G Sbjct: 135 NIIKERKG 142>XP_006712707 Length = 444 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 NLVSEREG 8 N++ ER+G Sbjct: 219 NIIKERKG 226>NP_001010893 Length = 438 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 NLVSEREG 8 NLV++ EG Sbjct: 89 NLVTDEEG 96Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.298 0.121 0.297 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 543,120 Number of extensions: 841 Number of successful extensions: 49 Number of sequences better than 10000.0: 49 Number of HSP's gapped: 49 Number of HSP's successfully gapped: 49 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.1 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |