Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_008835 19 869 NP_001075109 19 869 XP_006723719 18 1482 NP_001010872 16 7355 XP_006715085 16 7355 XP_006714730 16 7355 NP_002535 16 7355 NP_004658 15 9605 NP_060208 15 9605 NP_001181966 15 9605 NP_001071174 15 9605 XP_005260640 15 9605 XP_005260639 15 9605 XP_006720790 15 9605 XP_005268334 15 9605 XP_005268333 15 9605 XP_006720789 15 9605 XP_006716856 15 9605 XP_005251549 15 9605 XP_006715535 15 9605 NP_001004692 15 9605 NP_003601 15 9605 NP_001015885 15 9605>NP_008835 Length = 4128 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 NLSSNKAIS 9 NLSSN+AIS Sbjct: 839 NLSSNEAIS 847>NP_001075109 Length = 4097 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 NLSSNKAIS 9 NLSSN+AIS Sbjct: 839 NLSSNEAIS 847>XP_006723719 Length = 311 Score = 18.1 bits (35), Expect = 1482 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 NLSSNKAIS 9 NLSSNK+I+ Sbjct: 272 NLSSNKSIT 280>NP_001010872 Length = 1011 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 NLSSNKA 7 NLS NKA Sbjct: 788 NLSKNKA 794>XP_006715085 Length = 1011 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 NLSSNKA 7 NLS NKA Sbjct: 788 NLSKNKA 794>XP_006714730 Length = 338 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NLSSNKAI 8 NLS NKA+ Sbjct: 300 NLSLNKAL 307>NP_002535 Length = 440 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 NLSSNK 6 NLSSNK Sbjct: 152 NLSSNK 157>NP_004658 Length = 4834 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 NLSSNKAI 8 NL+SN++I Sbjct: 3742 NLASNRSI 3749>NP_060208 Length = 1406 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 NLSSNKAIS 9 N+S+NK S Sbjct: 485 NISANKGFS 493>NP_001181966 Length = 904 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LSSNKAI 8 LSSN+AI Sbjct: 600 LSSNRAI 606>NP_001071174 Length = 904 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LSSNKAI 8 LSSN+AI Sbjct: 600 LSSNRAI 606>XP_005260640 Length = 406 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 NLSSNKAI 8 +LSSN+AI Sbjct: 152 DLSSNQAI 159>XP_005260639 Length = 434 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 NLSSNKAI 8 +LSSN+AI Sbjct: 180 DLSSNQAI 187>XP_006720790 Length = 4748 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 NLSSNKAI 8 NL+SN++I Sbjct: 3656 NLASNRSI 3663>XP_005268334 Length = 4796 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 NLSSNKAI 8 NL+SN++I Sbjct: 3704 NLASNRSI 3711>XP_005268333 Length = 4796 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 NLSSNKAI 8 NL+SN++I Sbjct: 3704 NLASNRSI 3711>XP_006720789 Length = 4829 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 NLSSNKAI 8 NL+SN++I Sbjct: 3737 NLASNRSI 3744>XP_006716856 Length = 1343 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 NLSSNKAIS 9 N+S+NK S Sbjct: 422 NISANKGFS 430>XP_005251549 Length = 1405 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 NLSSNKAIS 9 N+S+NK S Sbjct: 485 NISANKGFS 493>XP_006715535 Length = 946 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LSSNKAI 8 LSSN+AI Sbjct: 642 LSSNRAI 648>NP_001004692 Length = 320 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LSSNKAIS 9 L+ NKAIS Sbjct: 84 LTGNKAIS 91>NP_003601 Length = 368 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 NLSSNKAI 8 +LSSN+AI Sbjct: 114 DLSSNQAI 121>NP_001015885 Length = 368 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 NLSSNKAI 8 +LSSN+AI Sbjct: 114 DLSSNQAI 121Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.287 0.102 0.225 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 341,888 Number of extensions: 538 Number of successful extensions: 23 Number of sequences better than 10000.0: 23 Number of HSP's gapped: 23 Number of HSP's successfully gapped: 23 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (14.9 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |