Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_443179 20 509 NP_005504 18 1935 NP_001360 17 4312 NP_076927 17 4312 NP_115780 17 4312 NP_001243246 17 4312 XP_005248319 17 4312 NP_115781 17 4312 NP_775820 16 5631 NP_001182583 16 7355 NP_115916 16 7355 NP_001182582 16 7355 NP_001076582 16 7355 NP_852150 16 7355 NP_001027545 16 7355 XP_005259285 16 7355 XP_006723432 16 7355 XP_006723431 16 7355 XP_005259284 16 7355 XP_006723430 16 7355 XP_005259283 16 7355 XP_005259282 16 7355 XP_005259281 16 7355 NP_001027544 16 7355 NP_079317 16 7355 NP_056197 15 9605 NP_004514 15 9605 NP_775734 15 9605 NP_001124198 15 9605 XP_005267560 15 9605 XP_005267559 15 9605 XP_006714048 15 9605 XP_005248267 15 9605>NP_443179 Length = 2170 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NLRESTIEG 9 NLREST EG Sbjct: 552 NLRESTTEG 560>NP_005504 Length = 439 Score = 17.7 bits (34), Expect = 1935 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LRESTIEG 9 LREST++G Sbjct: 281 LRESTVQG 288>NP_001360 Length = 4624 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LRESTIEG 9 L++STIEG Sbjct: 496 LQDSTIEG 503>NP_076927 Length = 454 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 NLRESTIEG 9 NLR S++EG Sbjct: 155 NLRVSSLEG 163>NP_115780 Length = 327 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 NLRESTIEG 9 NLR S++EG Sbjct: 28 NLRVSSLEG 36>NP_001243246 Length = 453 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 NLRESTIEG 9 NLR S++EG Sbjct: 155 NLRVSSLEG 163>XP_005248319 Length = 4609 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LRESTIEG 9 L++STIEG Sbjct: 481 LQDSTIEG 488>NP_115781 Length = 344 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 NLRESTIEG 9 NLR S++EG Sbjct: 155 NLRVSSLEG 163>NP_775820 Length = 374 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 RESTIEG 9 REST++G Sbjct: 46 RESTVDG 52>NP_001182583 Length = 502 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LRESTIEG 9 LRE+ +EG Sbjct: 255 LREAVVEG 262>NP_115916 Length = 531 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LRESTIEG 9 LRE+ +EG Sbjct: 255 LREAVVEG 262>NP_001182582 Length = 511 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LRESTIEG 9 LRE+ +EG Sbjct: 255 LREAVVEG 262>NP_001076582 Length = 511 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LRESTIEG 9 LRE+ +EG Sbjct: 255 LREAVVEG 262>NP_852150 Length = 511 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LRESTIEG 9 LRE+ +EG Sbjct: 255 LREAVVEG 262>NP_001027545 Length = 803 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NLRESTIE 8 N+REST E Sbjct: 791 NIRESTQE 798>XP_005259285 Length = 803 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NLRESTIE 8 N+REST E Sbjct: 791 NIRESTQE 798>XP_006723432 Length = 803 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NLRESTIE 8 N+REST E Sbjct: 791 NIRESTQE 798>XP_006723431 Length = 803 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NLRESTIE 8 N+REST E Sbjct: 791 NIRESTQE 798>XP_005259284 Length = 803 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NLRESTIE 8 N+REST E Sbjct: 791 NIRESTQE 798>XP_006723430 Length = 803 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NLRESTIE 8 N+REST E Sbjct: 791 NIRESTQE 798>XP_005259283 Length = 803 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NLRESTIE 8 N+REST E Sbjct: 791 NIRESTQE 798>XP_005259282 Length = 803 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NLRESTIE 8 N+REST E Sbjct: 791 NIRESTQE 798>XP_005259281 Length = 803 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NLRESTIE 8 N+REST E Sbjct: 791 NIRESTQE 798>NP_001027544 Length = 803 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NLRESTIE 8 N+REST E Sbjct: 791 NIRESTQE 798>NP_079317 Length = 165 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LRESTIEG 9 L EST+EG Sbjct: 63 LLESTLEG 70>NP_056197 Length = 2610 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 NLRESTIE 8 N RE+T+E Sbjct: 2100 NRREATVE 2107>NP_004514 Length = 1056 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 NLRESTIEG 9 +++E+TI+G Sbjct: 244 HMKETTIDG 252>NP_775734 Length = 529 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 RESTIEG 9 RES IEG Sbjct: 467 RESPIEG 473>NP_001124198 Length = 529 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 RESTIEG 9 RES IEG Sbjct: 467 RESPIEG 473>XP_005267560 Length = 2563 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 NLRESTIE 8 N RE+T+E Sbjct: 2053 NRREATVE 2060>XP_005267559 Length = 2610 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 NLRESTIE 8 N RE+T+E Sbjct: 2100 NRREATVE 2107>XP_006714048 Length = 540 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 RESTIEG 9 RES IEG Sbjct: 478 RESPIEG 484>XP_005248267 Length = 540 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 RESTIEG 9 RES IEG Sbjct: 478 RESPIEG 484Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.300 0.126 0.313 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 447,286 Number of extensions: 662 Number of successful extensions: 33 Number of sequences better than 10000.0: 33 Number of HSP's gapped: 33 Number of HSP's successfully gapped: 33 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.1 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |