Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_002430 20 390 NP_775797 17 4312 XP_005267429 17 4312 XP_006720123 17 4312 NP_009032 16 5631 NP_001128179 16 5631 XP_006717054 16 5631 XP_006717053 16 5631 XP_005272227 16 5631 NP_004817 16 7355 NP_001277716 16 7355 NP_001005609 16 7355 NP_001005612 16 7355 NP_001390 16 7355 NP_036265 16 7355 XP_006724693 16 7355 NP_073572 15 9605 NP_001073890 15 9605 XP_006722755 15 9605 NP_002064 15 9605>NP_002430 Length = 1137 Score = 20.0 bits (40), Expect = 390 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 NKRSKSIY 8 NKRSKSIY Sbjct: 222 NKRSKSIY 229>NP_775797 Length = 422 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 NKRSKSIYM 9 N+R +SIY+ Sbjct: 55 NRRGESIYL 63>XP_005267429 Length = 398 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 NKRSKSIYM 9 N+R +SIY+ Sbjct: 55 NRRGESIYL 63>XP_006720123 Length = 425 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 NKRSKSIYM 9 N+R +SIY+ Sbjct: 55 NRRGESIYL 63>NP_009032 Length = 918 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 NKRSKSIY 8 NKR K IY Sbjct: 911 NKRVKGIY 918>NP_001128179 Length = 918 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 NKRSKSIY 8 NKR K IY Sbjct: 911 NKRVKGIY 918>XP_006717054 Length = 918 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 NKRSKSIY 8 NKR K IY Sbjct: 911 NKRVKGIY 918>XP_006717053 Length = 918 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 NKRSKSIY 8 NKR K IY Sbjct: 911 NKRVKGIY 918>XP_005272227 Length = 918 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 NKRSKSIY 8 NKR K IY Sbjct: 911 NKRVKGIY 918>NP_004817 Length = 775 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 KRSKSIYM 9 +RS+SIY+ Sbjct: 723 RRSQSIYL 730>NP_001277716 Length = 773 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 KRSKSIYM 9 +RS+SIY+ Sbjct: 721 RRSQSIYL 728>NP_001005609 Length = 389 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 NKRSKS 6 NKRSKS Sbjct: 157 NKRSKS 162>NP_001005612 Length = 386 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 NKRSKS 6 NKRSKS Sbjct: 157 NKRSKS 162>NP_001390 Length = 391 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 NKRSKS 6 NKRSKS Sbjct: 157 NKRSKS 162>NP_036265 Length = 871 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 NKRSKSIYM 9 NK S S+Y+ Sbjct: 819 NKNSHSLYL 827>XP_006724693 Length = 388 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 NKRSKS 6 NKRSKS Sbjct: 157 NKRSKS 162>NP_073572 Length = 528 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 RSKSIY 8 RSKS+Y Sbjct: 516 RSKSVY 521>NP_001073890 Length = 1703 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 KRSKSIY 8 KR+K+IY Sbjct: 710 KRTKTIY 716>XP_006722755 Length = 1722 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 KRSKSIY 8 KR+K+IY Sbjct: 710 KRTKTIY 716>NP_002064 Length = 355 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 NKRSKSIY 8 NK +K IY Sbjct: 314 NKETKEIY 321Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.312 0.120 0.303 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 383,898 Number of extensions: 523 Number of successful extensions: 20 Number of sequences better than 10000.0: 20 Number of HSP's gapped: 20 Number of HSP's successfully gapped: 20 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |