Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_008835 19 869 NP_001075109 19 869 NP_001165948 16 5631 NP_001164263 16 5631 NP_001164262 16 5631 XP_005264218 16 5631 NP_001005487 16 7355 NP_001933 15 9605 NP_055994 15 9605 NP_001138586 15 9605 NP_001128643 15 9605 NP_001128642 15 9605 NP_114117 15 9605 NP_817123 15 9605 NP_001271266 15 9605 XP_005266332 15 9605 XP_006717155 15 9605 XP_006717154 15 9605 XP_005252009 15 9605 XP_006717151 15 9605 XP_005265873 15 9605 XP_005265872 15 9605 NP_001127925 15 9605 NP_114114 15 9605>NP_008835 Length = 4128 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NKELSIGIR 9 NKELSI IR Sbjct: 356 NKELSIAIR 364>NP_001075109 Length = 4097 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NKELSIGIR 9 NKELSI IR Sbjct: 356 NKELSIAIR 364>NP_001165948 Length = 423 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 KELSIGIR 9 KEL++G+R Sbjct: 61 KELTLGLR 68>NP_001164263 Length = 410 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NKELSIGI 8 NKEL +GI Sbjct: 6 NKELILGI 13>NP_001164262 Length = 410 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NKELSIGI 8 NKEL +GI Sbjct: 6 NKELILGI 13>XP_005264218 Length = 415 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NKELSIGI 8 NKEL +GI Sbjct: 6 NKELILGI 13>NP_001005487 Length = 307 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 NKELSIGIR 9 N+E+ GIR Sbjct: 291 NREMQAGIR 299>NP_001933 Length = 1049 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 ELSIGIR 9 +LSIG+R Sbjct: 346 QLSIGVR 352>NP_055994 Length = 1297 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 KELSIGIR 9 KE+S+G R Sbjct: 867 KEVSVGAR 874>NP_001138586 Length = 1236 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 KELSIGIR 9 KE+S+G R Sbjct: 806 KEVSVGAR 813>NP_001128643 Length = 289 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 NKELSIGI 8 NK L+IG+ Sbjct: 203 NKHLAIGL 210>NP_001128642 Length = 296 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 NKELSIGI 8 NK L+IG+ Sbjct: 210 NKHLAIGL 217>NP_114117 Length = 289 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 NKELSIGI 8 NK L+IG+ Sbjct: 203 NKHLAIGL 210>NP_817123 Length = 1040 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 NKELSIGIR 9 N +LSIG++ Sbjct: 344 NIQLSIGVK 352>NP_001271266 Length = 1197 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 KELSIGIR 9 KE+S+G R Sbjct: 767 KEVSVGAR 774>XP_005266332 Length = 426 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 KELSIGI 8 K+LS+GI Sbjct: 406 KQLSVGI 412>XP_006717155 Length = 145 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 NKELSIGIR 9 ++ELS G+R Sbjct: 24 SEELSTGVR 32>XP_006717154 Length = 145 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 NKELSIGIR 9 ++ELS G+R Sbjct: 24 SEELSTGVR 32>XP_005252009 Length = 358 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 NKELSIGIR 9 ++ELS G+R Sbjct: 24 SEELSTGVR 32>XP_006717151 Length = 399 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 NKELSIGIR 9 ++ELS G+R Sbjct: 24 SEELSTGVR 32>XP_005265873 Length = 262 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 NKELSIGI 8 NK L+IG+ Sbjct: 182 NKHLAIGL 189>XP_005265872 Length = 303 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 NKELSIGI 8 NK L+IG+ Sbjct: 223 NKHLAIGL 230>NP_001127925 Length = 1059 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 NKELSIGIR 9 N +LSIG++ Sbjct: 344 NIQLSIGVK 352>NP_114114 Length = 330 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 NKELSIGI 8 NK L+IG+ Sbjct: 250 NKHLAIGL 257Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.314 0.139 0.354 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 488,349 Number of extensions: 820 Number of successful extensions: 24 Number of sequences better than 10000.0: 24 Number of HSP's gapped: 24 Number of HSP's successfully gapped: 24 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |