Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001017981 17 4312 NP_438170 16 5631 NP_077015 16 5631 NP_001244899 16 5631 NP_002961 16 7355 NP_001013682 16 7355 XP_005270918 16 7355 NP_037361 15 9605 NP_079184 15 9605 NP_863651 15 9605 NP_001151 15 9605 NP_863658 15 9605 NP_064536 15 9605 NP_872393 15 9605 XP_005254738 15 9605 XP_006712515 15 9605 XP_006712514 15 9605 XP_006712513 15 9605 XP_006712512 15 9605 XP_006712511 15 9605 XP_006712510 15 9605 XP_006712509 15 9605 XP_005246533 15 9605 XP_006712508 15 9605 NP_115893 15 9605>NP_001017981 Length = 377 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 NISQMALRP 9 +ISQ+ LRP Sbjct: 169 DISQLLLRP 177>NP_438170 Length = 434 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 QMALRP 9 QMALRP Sbjct: 369 QMALRP 374>NP_077015 Length = 1004 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 QMALRP 9 QMALRP Sbjct: 606 QMALRP 611>NP_001244899 Length = 740 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 QMALRP 9 QMALRP Sbjct: 606 QMALRP 611>NP_002961 Length = 171 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 NISQMALR 8 N+SQ+A+R Sbjct: 112 NLSQVAMR 119>NP_001013682 Length = 626 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 ISQMALRP 9 +SQM RP Sbjct: 53 VSQMTFRP 60>XP_005270918 Length = 592 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 ISQMALRP 9 +SQM RP Sbjct: 53 VSQMTFRP 60>NP_037361 Length = 1237 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 NISQMALRP 9 N+S++ +RP Sbjct: 594 NLSRLVVRP 602>NP_079184 Length = 626 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 NISQMALRP 9 NI+ ++LRP Sbjct: 29 NIAYVSLRP 37>NP_863651 Length = 1248 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 NISQMALRP 9 N+S++ +RP Sbjct: 605 NLSRLVVRP 613>NP_001151 Length = 1194 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 NISQMALRP 9 N+S++ +RP Sbjct: 594 NLSRLVVRP 602>NP_863658 Length = 1205 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 NISQMALRP 9 N+S++ +RP Sbjct: 605 NLSRLVVRP 613>NP_064536 Length = 370 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 SQMALRP 9 SQM +RP Sbjct: 269 SQMVIRP 275>NP_872393 Length = 3234 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NISQMALR 8 NIS +ALR Sbjct: 1510 NISSVALR 1517>XP_005254738 Length = 472 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 NISQMALRP 9 NI+ ++LRP Sbjct: 29 NIAYVSLRP 37>XP_006712515 Length = 3232 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NISQMALR 8 NIS +ALR Sbjct: 1508 NISSVALR 1515>XP_006712514 Length = 2496 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NISQMALR 8 NIS +ALR Sbjct: 1581 NISSVALR 1588>XP_006712513 Length = 3220 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NISQMALR 8 NIS +ALR Sbjct: 1477 NISSVALR 1484>XP_006712512 Length = 3237 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NISQMALR 8 NIS +ALR Sbjct: 1513 NISSVALR 1520>XP_006712511 Length = 3256 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NISQMALR 8 NIS +ALR Sbjct: 1513 NISSVALR 1520>XP_006712510 Length = 3305 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NISQMALR 8 NIS +ALR Sbjct: 1581 NISSVALR 1588>XP_006712509 Length = 3319 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NISQMALR 8 NIS +ALR Sbjct: 1576 NISSVALR 1583>XP_005246533 Length = 3323 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NISQMALR 8 NIS +ALR Sbjct: 1581 NISSVALR 1588>XP_006712508 Length = 3324 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NISQMALR 8 NIS +ALR Sbjct: 1581 NISSVALR 1588>NP_115893 Length = 3258 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NISQMALR 8 NIS +ALR Sbjct: 1515 NISSVALR 1522Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.321 0.128 0.346 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 313,560 Number of extensions: 471 Number of successful extensions: 25 Number of sequences better than 10000.0: 25 Number of HSP's gapped: 25 Number of HSP's successfully gapped: 25 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.0 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |