Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value XP_005248121 17 2528 NP_003961 17 3301 XP_006716300 17 3301 NP_001135741 17 4312 NP_000812 17 4312 NP_060347 17 4312 XP_005264316 17 4312 NP_055877 16 5631 NP_001275656 16 5631 NP_849157 16 5631 NP_055621 16 5631 NP_001129471 16 5631 NP_003387 16 5631 XP_006725694 16 5631 XP_005257694 16 5631 XP_006717794 16 5631 XP_005269715 16 5631 XP_006717793 16 5631 XP_005269713 16 5631 XP_006714159 16 5631 XP_006714158 16 5631 XP_006714157 16 5631 NP_000029 16 7355 NP_001120983 16 7355 NP_001120982 16 7355 NP_001040625 16 7355 NP_005854 16 7355 NP_001138923 16 7355 NP_004481 15 9605 NP_060145 15 9605 NP_001165447 15 9605 NP_059129 15 9605 NP_001093155 15 9605 XP_006716845 15 9605 XP_005251541 15 9605 XP_006716843 15 9605 XP_005251540 15 9605 XP_006714950 15 9605 XP_006712520 15 9605 XP_005246534 15 9605 NP_115887 15 9605 NP_066553 15 9605>XP_005248121 Length = 1543 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 NISPFRSVG 9 NISPF VG Sbjct: 15 NISPFPFVG 23>NP_003961 Length = 1465 Score = 16.9 bits (32), Expect = 3301 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 PFRSVG 9 PFRSVG Sbjct: 255 PFRSVG 260>XP_006716300 Length = 1445 Score = 16.9 bits (32), Expect = 3301 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 PFRSVG 9 PFRSVG Sbjct: 255 PFRSVG 260>NP_001135741 Length = 701 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 NISPFRSVG 9 N+ PF +VG Sbjct: 667 NLRPFEAVG 675>NP_000812 Length = 758 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 NISPFRSVG 9 N+ PF +VG Sbjct: 724 NLRPFEAVG 732>NP_060347 Length = 371 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 NISPFRSVG 9 N+ P R+VG Sbjct: 205 NVHPLRAVG 213>XP_005264316 Length = 756 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 NISPFRSVG 9 N+ PF +VG Sbjct: 722 NLRPFEAVG 730>NP_055877 Length = 1664 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 NISPFRSV 8 N+SPF S+ Sbjct: 142 NLSPFDSI 149>NP_001275656 Length = 1400 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 NISPFRSV 8 N+SPF S+ Sbjct: 142 NLSPFDSI 149>NP_849157 Length = 1077 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 NISPFRSVG 9 +ISP R+VG Sbjct: 687 SISPSRNVG 695>NP_055621 Length = 1516 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 SPFRSVG 9 SP RSVG Sbjct: 781 SPIRSVG 787>NP_001129471 Length = 1516 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 SPFRSVG 9 SP RSVG Sbjct: 781 SPIRSVG 787>NP_003387 Length = 357 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 ISPFRSVG 9 +SPFR G Sbjct: 228 LSPFRETG 235>XP_006725694 Length = 329 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 ISPFRSVG 9 +SPFR G Sbjct: 228 LSPFRETG 235>XP_005257694 Length = 329 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 ISPFRSVG 9 +SPFR G Sbjct: 228 LSPFRETG 235>XP_006717794 Length = 1194 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 NISPFRSV 8 N+SPF S+ Sbjct: 142 NLSPFDSI 149>XP_005269715 Length = 1230 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 NISPFRSV 8 N+SPF S+ Sbjct: 142 NLSPFDSI 149>XP_006717793 Length = 1603 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 NISPFRSV 8 N+SPF S+ Sbjct: 142 NLSPFDSI 149>XP_005269713 Length = 1646 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 NISPFRSV 8 N+SPF S+ Sbjct: 142 NLSPFDSI 149>XP_006714159 Length = 1077 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 NISPFRSVG 9 +ISP R+VG Sbjct: 687 SISPSRNVG 695>XP_006714158 Length = 1077 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 NISPFRSVG 9 +ISP R+VG Sbjct: 687 SISPSRNVG 695>XP_006714157 Length = 1077 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 NISPFRSVG 9 +ISP R+VG Sbjct: 687 SISPSRNVG 695>NP_000029 Length = 2843 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 ISPFRSVG 9 +SP+RS G Sbjct: 1099 VSPYRSRG 1106>NP_001120983 Length = 2825 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 ISPFRSVG 9 +SP+RS G Sbjct: 1081 VSPYRSRG 1088>NP_001120982 Length = 2843 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 ISPFRSVG 9 +SP+RS G Sbjct: 1099 VSPYRSRG 1106>NP_001040625 Length = 596 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 ISPFRSVG 9 I+PF+S G Sbjct: 500 IAPFQSAG 507>NP_005854 Length = 542 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 ISPFRSVG 9 I+PF+S G Sbjct: 446 IAPFQSAG 453>NP_001138923 Length = 870 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 SPFRSV 8 SPFRS+ Sbjct: 140 SPFRSI 145>NP_004481 Length = 540 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 NISPFRSV 8 +ISP RS+ Sbjct: 364 SISPMRSI 371>NP_060145 Length = 1310 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 NISPFRSVG 9 ++SP R+VG Sbjct: 417 SVSPERAVG 425>NP_001165447 Length = 1310 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 NISPFRSVG 9 ++SP R+VG Sbjct: 417 SVSPERAVG 425>NP_059129 Length = 1616 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 ISPFRSVG 9 ++PF+S+G Sbjct: 378 LNPFQSLG 385>NP_001093155 Length = 288 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 NISPFRSVG 9 N+ PF +VG Sbjct: 200 NMLPFMAVG 208>XP_006716845 Length = 546 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 ISPFRS 7 +SPFRS Sbjct: 185 LSPFRS 190>XP_005251541 Length = 825 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 ISPFRS 7 +SPFRS Sbjct: 185 LSPFRS 190>XP_006716843 Length = 924 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 ISPFRS 7 +SPFRS Sbjct: 185 LSPFRS 190>XP_005251540 Length = 934 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 ISPFRS 7 +SPFRS Sbjct: 185 LSPFRS 190>XP_006714950 Length = 1304 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 NISPFRSVG 9 ++SP R+VG Sbjct: 417 SVSPERAVG 425>XP_006712520 Length = 340 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 NISPFRSV 8 +ISP RS+ Sbjct: 164 SISPMRSI 171>XP_005246534 Length = 453 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 NISPFRSV 8 +ISP RS+ Sbjct: 277 SISPMRSI 284>NP_115887 Length = 288 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 NISPFRSVG 9 N+ PF +VG Sbjct: 200 NMLPFMAVG 208>NP_066553 Length = 473 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 ISPFRSVG 9 +SPFR G Sbjct: 129 LSPFRKQG 136Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.320 0.139 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 598,728 Number of extensions: 682 Number of successful extensions: 42 Number of sequences better than 10000.0: 42 Number of HSP's gapped: 42 Number of HSP's successfully gapped: 42 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.8 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |