Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005091 18 1135 NP_653080 18 1135 XP_005267292 18 1135 XP_005267291 18 1135 XP_005267290 18 1135 NP_002190 17 3301 XP_005263043 17 3301 XP_005263041 17 3301 NP_001139182 16 5631 NP_060833 16 5631 NP_001026879 16 5631 XP_005270007 16 5631 XP_005270005 16 5631 XP_005270003 16 5631 NP_001106970 16 7355 NP_878250 16 7355 XP_006720131 16 7355 NP_803173 15 9605>NP_005091 Length = 1782 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 NIESSELVT 9 +IESSELVT Sbjct: 1129 SIESSELVT 1137>NP_653080 Length = 1684 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 NIESSELVT 9 +IESSELVT Sbjct: 1031 SIESSELVT 1039>XP_005267292 Length = 1677 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 NIESSELVT 9 +IESSELVT Sbjct: 1024 SIESSELVT 1032>XP_005267291 Length = 1684 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 NIESSELVT 9 +IESSELVT Sbjct: 1031 SIESSELVT 1039>XP_005267290 Length = 1782 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 NIESSELVT 9 +IESSELVT Sbjct: 1129 SIESSELVT 1137>NP_002190 Length = 349 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 NIESSELVT 9 NIE+ E+VT Sbjct: 186 NIENQEIVT 194>XP_005263043 Length = 187 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 NIESSELVT 9 NIE+ E+VT Sbjct: 24 NIENQEIVT 32>XP_005263041 Length = 347 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 NIESSELVT 9 NIE+ E+VT Sbjct: 184 NIENQEIVT 192>NP_001139182 Length = 324 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 NIESSELVT 9 N++S +LVT Sbjct: 3 NVDSDDLVT 11>NP_060833 Length = 315 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 NIESSEL 7 NIESSE+ Sbjct: 232 NIESSEI 238>NP_001026879 Length = 342 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 NIESSEL 7 NIESSE+ Sbjct: 232 NIESSEI 238>XP_005270007 Length = 232 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 NIESSEL 7 NIESSE+ Sbjct: 149 NIESSEI 155>XP_005270005 Length = 259 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 NIESSEL 7 NIESSE+ Sbjct: 149 NIESSEI 155>XP_005270003 Length = 306 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 NIESSEL 7 NIESSE+ Sbjct: 232 NIESSEI 238>NP_001106970 Length = 956 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 NIESSELVT 9 NI+ EL+T Sbjct: 693 NIQKGELIT 701>NP_878250 Length = 727 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 NIESSELVT 9 NI+ EL+T Sbjct: 464 NIQKGELIT 472>XP_006720131 Length = 957 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 NIESSELVT 9 NI+ EL+T Sbjct: 694 NIQKGELIT 702>NP_803173 Length = 276 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 NIESSEL 7 N+ESSE+ Sbjct: 222 NVESSEV 228Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.290 0.111 0.243 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 256,953 Number of extensions: 200 Number of successful extensions: 18 Number of sequences better than 10000.0: 18 Number of HSP's gapped: 18 Number of HSP's successfully gapped: 18 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (14.9 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |