Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_115803 20 299 NP_705838 16 5631 NP_001371 16 5631 NP_001277152 16 5631 NP_859067 16 5631 NP_573420 16 5631 NP_573419 16 5631 NP_573418 16 5631 NP_006042 16 5631 NP_001035519 16 5631 XP_005266415 16 5631 XP_005266414 16 5631 XP_006717746 16 5631 XP_006717745 16 5631 NP_004454 16 7355 NP_001018066 15 9605 NP_003374 15 9605 NP_055778 15 9605 NP_001093592 15 9605 NP_001034485 15 9605 XP_005259577 15 9605 XP_005259576 15 9605 XP_006716928 15 9605 XP_006716927 15 9605>NP_115803 Length = 1156 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 NIDLGRQSQ 9 NIDLG+QSQ Sbjct: 341 NIDLGQQSQ 349>NP_705838 Length = 4069 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 DLGRQS 8 DLGRQS Sbjct: 1644 DLGRQS 1649>NP_001371 Length = 1865 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 NIDLGRQSQ 9 NID+ RQ++ Sbjct: 208 NIDINRQAK 216>NP_001277152 Length = 1886 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 NIDLGRQSQ 9 NID+ RQ++ Sbjct: 208 NIDINRQAK 216>NP_859067 Length = 272 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 NIDLGRQSQ 9 N+DLG Q + Sbjct: 105 NLDLGEQRE 113>NP_573420 Length = 484 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 DLGRQS 8 DLGRQS Sbjct: 377 DLGRQS 382>NP_573419 Length = 486 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 DLGRQS 8 DLGRQS Sbjct: 379 DLGRQS 384>NP_573418 Length = 491 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 DLGRQS 8 DLGRQS Sbjct: 384 DLGRQS 389>NP_006042 Length = 493 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 DLGRQS 8 DLGRQS Sbjct: 386 DLGRQS 391>NP_001035519 Length = 1159 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NIDLGRQS 8 N DLGR+S Sbjct: 1125 NRDLGRES 1132>XP_005266415 Length = 1158 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NIDLGRQS 8 N DLGR+S Sbjct: 1124 NRDLGRES 1131>XP_005266414 Length = 1159 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NIDLGRQS 8 N DLGR+S Sbjct: 1125 NRDLGRES 1132>XP_006717746 Length = 950 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 NIDLGRQSQ 9 NID+ RQ++ Sbjct: 208 NIDINRQAK 216>XP_006717745 Length = 1046 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 NIDLGRQSQ 9 NID+ RQ++ Sbjct: 208 NIDINRQAK 216>NP_004454 Length = 961 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 NIDLGRQS 8 N+DLG+++ Sbjct: 717 NVDLGKRA 724>NP_001018066 Length = 845 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 NIDLGRQS 8 +ID+GR S Sbjct: 818 SIDIGRHS 825>NP_003374 Length = 873 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 NIDLGRQS 8 +ID+GR S Sbjct: 846 SIDIGRHS 853>NP_055778 Length = 1366 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 DLGRQSQ 9 ++GRQSQ Sbjct: 1097 NIGRQSQ 1103>NP_001093592 Length = 1309 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 DLGRQSQ 9 ++GRQSQ Sbjct: 1040 NIGRQSQ 1046>NP_001034485 Length = 716 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 1 NIDLGR 6 N+D+GR Sbjct: 56 NVDMGR 61>XP_005259577 Length = 1366 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 DLGRQSQ 9 ++GRQSQ Sbjct: 1097 NIGRQSQ 1103>XP_005259576 Length = 1366 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 DLGRQSQ 9 ++GRQSQ Sbjct: 1097 NIGRQSQ 1103>XP_006716928 Length = 850 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 NIDLGRQS 8 +ID+GR S Sbjct: 823 SIDIGRHS 830>XP_006716927 Length = 878 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 NIDLGRQS 8 +ID+GR S Sbjct: 851 SIDIGRHS 858Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.311 0.132 0.349 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 477,818 Number of extensions: 753 Number of successful extensions: 24 Number of sequences better than 10000.0: 24 Number of HSP's gapped: 24 Number of HSP's successfully gapped: 24 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |