Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001245202 20 509 NP_001245200 20 509 NP_001161091 20 509 NP_000240 20 509 NP_001161090 20 509 NP_001161089 20 509 NP_001245203 20 509 XP_005265221 20 509 XP_005265220 20 509 NP_060876 17 2528 NP_078831 17 2528 NP_036294 17 2528 NP_065228 17 4312 NP_001164278 17 4312 XP_006715676 17 4312 NP_005110 16 5631 NP_002449 16 7355 NP_001092002 16 7355 NP_001092001 16 7355 NP_006096 16 7355 XP_005268628 16 7355 XP_005268627 16 7355 XP_005268626 16 7355 NP_003189 16 7355 NP_065988 15 9605 NP_277047 15 9605 XP_005259798 15 9605 XP_006722711 15 9605 XP_005267986 15 9605 NP_001290 15 9605>NP_001245202 Length = 515 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NHSLVESTS 9 NH LVESTS Sbjct: 22 NHRLVESTS 30>NP_001245200 Length = 687 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NHSLVESTS 9 NH LVESTS Sbjct: 263 NHRLVESTS 271>NP_001161091 Length = 515 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NHSLVESTS 9 NH LVESTS Sbjct: 22 NHRLVESTS 30>NP_000240 Length = 756 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NHSLVESTS 9 NH LVESTS Sbjct: 263 NHRLVESTS 271>NP_001161090 Length = 515 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NHSLVESTS 9 NH LVESTS Sbjct: 22 NHRLVESTS 30>NP_001161089 Length = 658 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NHSLVESTS 9 NH LVESTS Sbjct: 165 NHRLVESTS 173>NP_001245203 Length = 515 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NHSLVESTS 9 NH LVESTS Sbjct: 22 NHRLVESTS 30>XP_005265221 Length = 515 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NHSLVESTS 9 NH LVESTS Sbjct: 22 NHRLVESTS 30>XP_005265220 Length = 515 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NHSLVESTS 9 NH LVESTS Sbjct: 22 NHRLVESTS 30>NP_060876 Length = 5412 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 NHSLVESTS 9 NHS + STS Sbjct: 617 NHSTIHSTS 625>NP_078831 Length = 533 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 HSLVESTS 9 HS+VEST+ Sbjct: 249 HSMVESTA 256>NP_036294 Length = 539 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 HSLVESTS 9 HS+VEST+ Sbjct: 255 HSMVESTA 262>NP_065228 Length = 284 Score = 16.5 bits (31), Expect = 4312 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 NHSLVE 6 NHSLVE Sbjct: 73 NHSLVE 78>NP_001164278 Length = 284 Score = 16.5 bits (31), Expect = 4312 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 NHSLVE 6 NHSLVE Sbjct: 73 NHSLVE 78>XP_006715676 Length = 284 Score = 16.5 bits (31), Expect = 4312 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 NHSLVE 6 NHSLVE Sbjct: 73 NHSLVE 78>NP_005110 Length = 955 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NHSLVEST 8 NHS VES+ Sbjct: 165 NHSRVESS 172>NP_002449 Length = 5762 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 HSLVESTS 9 H+LV+ST+ Sbjct: 275 HALVDSTA 282>NP_001092002 Length = 881 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 NHSLVES 7 NH+LVE+ Sbjct: 787 NHTLVEN 793>NP_001092001 Length = 923 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 NHSLVES 7 NH+LVE+ Sbjct: 829 NHTLVEN 835>NP_006096 Length = 881 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 NHSLVES 7 NH+LVE+ Sbjct: 787 NHTLVEN 793>XP_005268628 Length = 495 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 NHSLVES 7 NH+LVE+ Sbjct: 401 NHTLVEN 407>XP_005268627 Length = 779 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 NHSLVES 7 NH+LVE+ Sbjct: 685 NHTLVEN 691>XP_005268626 Length = 779 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 NHSLVES 7 NH+LVE+ Sbjct: 685 NHTLVEN 691>NP_003189 Length = 798 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 NHSLVEST 8 NH L+E T Sbjct: 622 NHVLIEET 629>NP_065988 Length = 2048 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 NHSLVESTS 9 NH+ V+ST+ Sbjct: 1752 NHNEVQSTT 1760>NP_277047 Length = 417 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 NHSLVES 7 NHS +ES Sbjct: 356 NHSSIES 362>XP_005259798 Length = 247 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 NHSLVEST 8 NH+ V+ST Sbjct: 66 NHTQVQST 73>XP_006722711 Length = 257 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 NHSLVEST 8 NH+ V+ST Sbjct: 116 NHTQVQST 123>XP_005267986 Length = 2022 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 NHSLVESTS 9 NH+ V+ST+ Sbjct: 1726 NHNEVQSTT 1734>NP_001290 Length = 297 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 NHSLVEST 8 NH+ V+ST Sbjct: 116 NHTQVQST 123Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.288 0.101 0.243 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 410,212 Number of extensions: 625 Number of successful extensions: 30 Number of sequences better than 10000.0: 30 Number of HSP's gapped: 30 Number of HSP's successfully gapped: 30 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.0 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |