Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001268421 19 869 NP_000170 19 869 NP_073594 18 1935 XP_005247773 18 1935 XP_006713796 18 1935 XP_005247772 18 1935 XP_005247768 18 1935 XP_006713794 18 1935 XP_005247767 18 1935 XP_005274446 17 3301 NP_061928 16 5631 XP_005271654 16 5631 XP_005271653 16 5631 XP_006718924 16 5631>NP_001268421 Length = 1230 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 NEASARASR 9 N+ASARASR Sbjct: 21 NKASARASR 29>NP_000170 Length = 1360 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 NEASARASR 9 N+ASARASR Sbjct: 21 NKASARASR 29>NP_073594 Length = 912 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 NEASARASR 9 NEASAR+ R Sbjct: 135 NEASARSER 143>XP_005247773 Length = 523 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 NEASARASR 9 NEASAR+ R Sbjct: 176 NEASARSER 184>XP_006713796 Length = 651 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 NEASARASR 9 NEASAR+ R Sbjct: 176 NEASARSER 184>XP_005247772 Length = 700 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 NEASARASR 9 NEASAR+ R Sbjct: 176 NEASARSER 184>XP_005247768 Length = 794 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 NEASARASR 9 NEASAR+ R Sbjct: 176 NEASARSER 184>XP_006713794 Length = 810 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 NEASARASR 9 NEASAR+ R Sbjct: 176 NEASARSER 184>XP_005247767 Length = 953 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 NEASARASR 9 NEASAR+ R Sbjct: 176 NEASARSER 184>XP_005274446 Length = 415 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 NEASARASR 9 +E SARASR Sbjct: 371 SETSARASR 379>NP_061928 Length = 1007 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 NEASARAS 8 N ASARAS Sbjct: 884 NAASARAS 891>XP_005271654 Length = 862 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 NEASARAS 8 N ASARAS Sbjct: 739 NAASARAS 746>XP_005271653 Length = 862 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 NEASARAS 8 N ASARAS Sbjct: 739 NAASARAS 746>XP_006718924 Length = 969 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 NEASARAS 8 N ASARAS Sbjct: 846 NAASARAS 853Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.292 0.0962 0.215 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 142,603 Number of extensions: 109 Number of successful extensions: 14 Number of sequences better than 10000.0: 14 Number of HSP's gapped: 14 Number of HSP's successfully gapped: 14 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.2 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |