Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001245210 20 509 NP_000242 20 509 XP_005264389 20 509 NP_001078823 17 3301 NP_078933 17 3301 XP_006724755 17 3301 XP_005262247 17 3301 NP_004897 17 4312 NP_001257460 17 4312 NP_057726 16 5631 NP_001018098 16 5631 NP_060154 16 5631 NP_060550 16 5631 NP_065872 16 5631 NP_001273701 16 5631 NP_060671 16 5631 NP_054861 16 5631 XP_005254495 16 5631 XP_005252117 16 5631 XP_006717210 16 5631 NP_005531 16 7355 NP_001034456 16 7355 NP_001034455 16 7355 NP_001687 16 7355 NP_071934 16 7355 NP_001026884 16 7355 XP_005268062 16 7355 XP_005268061 16 7355 XP_005271929 16 7355 XP_005270894 16 7355 XP_005270892 16 7355 NP_001275 16 7355 NP_060493 15 9605 XP_006713751 15 9605 XP_005247655 15 9605 XP_005247654 15 9605 NP_112486 15 9605>NP_001245210 Length = 868 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NDVLVQLDA 9 NDVL QLDA Sbjct: 530 NDVLAQLDA 538>NP_000242 Length = 934 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NDVLVQLDA 9 NDVL QLDA Sbjct: 596 NDVLAQLDA 604>XP_005264389 Length = 921 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NDVLVQLDA 9 NDVL QLDA Sbjct: 596 NDVLAQLDA 604>NP_001078823 Length = 900 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 NDVLVQLDA 9 ND+L Q DA Sbjct: 201 NDLLAQFDA 209>NP_078933 Length = 937 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 NDVLVQLDA 9 ND+L Q DA Sbjct: 201 NDLLAQFDA 209>XP_006724755 Length = 532 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 NDVLVQLDA 9 ND+L Q DA Sbjct: 201 NDLLAQFDA 209>XP_005262247 Length = 845 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 NDVLVQLDA 9 ND+L Q DA Sbjct: 109 NDLLAQFDA 117>NP_004897 Length = 396 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 NDVLVQLD 8 ND ++QLD Sbjct: 205 NDFIIQLD 212>NP_001257460 Length = 396 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 NDVLVQLD 8 ND ++QLD Sbjct: 205 NDFIIQLD 212>NP_057726 Length = 3674 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 DVLVQLDA 9 DVL+QL+A Sbjct: 1018 DVLLQLEA 1025>NP_001018098 Length = 3628 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 NDVLVQLDA 9 + VLVQ+DA Sbjct: 2524 DSVLVQIDA 2532>NP_060154 Length = 3710 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 NDVLVQLDA 9 + VLVQ+DA Sbjct: 2481 DSVLVQIDA 2489>NP_060550 Length = 3585 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 NDVLVQLDA 9 + VLVQ+DA Sbjct: 2481 DSVLVQIDA 2489>NP_065872 Length = 3753 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 NDVLVQLDA 9 + VLVQ+DA Sbjct: 2524 DSVLVQIDA 2532>NP_001273701 Length = 275 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 NDVLVQLD 8 N+VL+Q+D Sbjct: 117 NEVLLQID 124>NP_060671 Length = 400 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 NDVLVQLD 8 N+VL+Q+D Sbjct: 117 NEVLLQID 124>NP_054861 Length = 219 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 NDVLVQLDA 9 ND+L +LDA Sbjct: 176 NDLLQRLDA 184>XP_005254495 Length = 3694 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 DVLVQLDA 9 DVL+QL+A Sbjct: 1038 DVLLQLEA 1045>XP_005252117 Length = 324 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 NDVLVQLD 8 N+VL+Q+D Sbjct: 41 NEVLLQID 48>XP_006717210 Length = 379 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 NDVLVQLD 8 N+VL+Q+D Sbjct: 117 NEVLLQID 124>NP_005531 Length = 913 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NDVLVQLD 8 +DV VQLD Sbjct: 95 SDVTVQLD 102>NP_001034456 Length = 196 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NDVLVQLD 8 NDV VQ+D Sbjct: 131 NDVDVQID 138>NP_001034455 Length = 204 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NDVLVQLD 8 NDV VQ+D Sbjct: 139 NDVDVQID 146>NP_001687 Length = 226 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NDVLVQLD 8 NDV VQ+D Sbjct: 161 NDVDVQID 168>NP_071934 Length = 1249 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 DVLVQLDA 9 D+L+QL+A Sbjct: 240 DLLIQLEA 247>NP_001026884 Length = 1240 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 DVLVQLDA 9 D+L+QL+A Sbjct: 240 DLLIQLEA 247>XP_005268062 Length = 1272 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 DVLVQLDA 9 D+L+QL+A Sbjct: 272 DLLIQLEA 279>XP_005268061 Length = 1281 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 DVLVQLDA 9 D+L+QL+A Sbjct: 272 DLLIQLEA 279>XP_005271929 Length = 262 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 NDVLVQLDA 9 N+++ Q+DA Sbjct: 235 NEIVTQIDA 243>XP_005270894 Length = 536 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NDVLVQLD 8 +DV VQLD Sbjct: 95 SDVTVQLD 102>XP_005270892 Length = 801 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NDVLVQLD 8 +DV VQLD Sbjct: 95 SDVTVQLD 102>NP_001275 Length = 193 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 NDVLVQLDA 9 N+++ Q+DA Sbjct: 135 NEIVTQIDA 143>NP_060493 Length = 1422 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 DVLVQLDA 9 DVL Q+D+ Sbjct: 1252 DVLTQIDS 1259>XP_006713751 Length = 1423 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 DVLVQLDA 9 DVL Q+D+ Sbjct: 1253 DVLTQIDS 1260>XP_005247655 Length = 1423 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 DVLVQLDA 9 DVL Q+D+ Sbjct: 1253 DVLTQIDS 1260>XP_005247654 Length = 1423 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 DVLVQLDA 9 DVL Q+D+ Sbjct: 1253 DVLTQIDS 1260>NP_112486 Length = 403 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 NDVLVQLD 8 +D+++QLD Sbjct: 152 SDIIMQLD 159Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.317 0.137 0.351 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 372,795 Number of extensions: 594 Number of successful extensions: 37 Number of sequences better than 10000.0: 37 Number of HSP's gapped: 37 Number of HSP's successfully gapped: 37 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |